Experiment: R2A control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS21560 and BWI76_RS21565 are separated by 147 nucleotides BWI76_RS21565 and BWI76_RS21570 are separated by 65 nucleotides BWI76_RS21570 and BWI76_RS21575 overlap by 11 nucleotides BWI76_RS21575 and BWI76_RS21580 are separated by 110 nucleotides
BWI76_RS21560: BWI76_RS21560 - DNA repair protein RecN, at 4,513,052 to 4,514,713
_RS21560
BWI76_RS21565: BWI76_RS21565 - outer membrane protein assembly factor BamE, at 4,514,861 to 4,515,202
_RS21565
BWI76_RS21570: BWI76_RS21570 - RnfH family protein, at 4,515,268 to 4,515,558
_RS21570
BWI76_RS21575: BWI76_RS21575 - hypothetical protein, at 4,515,548 to 4,516,024
_RS21575
BWI76_RS21580: BWI76_RS21580 - SsrA-binding protein, at 4,516,135 to 4,516,617
_RS21580
Position (kb) 4515
4516 Strain fitness (log2 ratio) -1
0
1 at 4514.506 kb on + strand, within BWI76_RS21560 at 4514.549 kb on - strand at 4514.600 kb on + strand at 4514.822 kb on + strand at 4515.166 kb on - strand, within BWI76_RS21565 at 4515.280 kb on + strand at 4515.361 kb on - strand at 4515.402 kb on + strand, within BWI76_RS21570 at 4515.489 kb on + strand, within BWI76_RS21570 at 4515.558 kb on + strand at 4515.566 kb on - strand at 4515.566 kb on - strand at 4516.070 kb on - strand at 4516.131 kb on - strand at 4516.288 kb on + strand, within BWI76_RS21580 at 4516.402 kb on + strand, within BWI76_RS21580 at 4516.469 kb on - strand, within BWI76_RS21580
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control remove 4,514,506 + BWI76_RS21560 0.87 +0.3 4,514,549 - -0.5 4,514,600 + +0.3 4,514,822 + -0.1 4,515,166 - BWI76_RS21565 0.89 +0.1 4,515,280 + +0.1 4,515,361 - -0.4 4,515,402 + BWI76_RS21570 0.46 +0.2 4,515,489 + BWI76_RS21570 0.76 +0.5 4,515,558 + -0.8 4,515,566 - +0.2 4,515,566 - -0.2 4,516,070 - -0.4 4,516,131 - -0.9 4,516,288 + BWI76_RS21580 0.32 +0.6 4,516,402 + BWI76_RS21580 0.55 +1.2 4,516,469 - BWI76_RS21580 0.69 +1.1
Or see this region's nucleotide sequence