Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS13425

Experiment: R2A with Vogels_fungal_media 0.8X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS13415 and BWI76_RS13420 overlap by 11 nucleotidesBWI76_RS13420 and BWI76_RS13425 are separated by 22 nucleotides BWI76_RS13415: BWI76_RS13415 - spermidine/putrescine ABC transporter permease, at 2,798,280 to 2,799,209 _RS13415 BWI76_RS13420: BWI76_RS13420 - ABC transporter permease, at 2,799,199 to 2,800,005 _RS13420 BWI76_RS13425: BWI76_RS13425 - 1-pyrroline dehydrogenase, at 2,800,028 to 2,801,455 _RS13425 Position (kb) 2800 2801 2802Strain fitness (log2 ratio) -1 0 1at 2799.088 kb on + strand, within BWI76_RS13415at 2799.296 kb on - strand, within BWI76_RS13420at 2799.351 kb on + strand, within BWI76_RS13420at 2800.018 kb on + strandat 2800.059 kb on - strandat 2800.147 kb on + strandat 2800.309 kb on - strand, within BWI76_RS13425at 2800.758 kb on + strand, within BWI76_RS13425at 2800.823 kb on - strand, within BWI76_RS13425at 2800.846 kb on + strand, within BWI76_RS13425at 2800.890 kb on - strand, within BWI76_RS13425at 2801.218 kb on - strand, within BWI76_RS13425at 2801.263 kb on - strand, within BWI76_RS13425at 2801.389 kb on + strandat 2801.413 kb on + strandat 2801.576 kb on + strandat 2801.689 kb on + strandat 2801.696 kb on - strandat 2801.722 kb on - strandat 2801.746 kb on + strandat 2801.746 kb on + strandat 2801.750 kb on - strandat 2801.855 kb on - strandat 2802.065 kb on - strandat 2802.194 kb on - strandat 2802.210 kb on + strandat 2802.210 kb on + strandat 2802.210 kb on + strandat 2802.210 kb on + strandat 2802.210 kb on + strandat 2802.218 kb on - strandat 2802.218 kb on - strandat 2802.218 kb on - strandat 2802.218 kb on - strandat 2802.232 kb on + strandat 2802.245 kb on + strandat 2802.245 kb on + strandat 2802.245 kb on + strandat 2802.253 kb on - strandat 2802.260 kb on - strandat 2802.265 kb on + strandat 2802.265 kb on + strandat 2802.273 kb on - strandat 2802.405 kb on + strandat 2802.406 kb on - strandat 2802.406 kb on - strandat 2802.455 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.8X
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2,799,088 + BWI76_RS13415 0.87 -0.3
2,799,296 - BWI76_RS13420 0.12 -0.1
2,799,351 + BWI76_RS13420 0.19 -0.4
2,800,018 + -0.0
2,800,059 - +0.5
2,800,147 + -0.1
2,800,309 - BWI76_RS13425 0.20 -0.6
2,800,758 + BWI76_RS13425 0.51 -1.1
2,800,823 - BWI76_RS13425 0.56 -0.1
2,800,846 + BWI76_RS13425 0.57 -1.3
2,800,890 - BWI76_RS13425 0.60 +0.3
2,801,218 - BWI76_RS13425 0.83 -1.5
2,801,263 - BWI76_RS13425 0.86 -0.2
2,801,389 + -0.4
2,801,413 + -1.2
2,801,576 + +0.2
2,801,689 + +0.4
2,801,696 - +0.1
2,801,722 - -0.0
2,801,746 + +0.1
2,801,746 + -0.5
2,801,750 - -0.9
2,801,855 - +0.8
2,802,065 - -0.8
2,802,194 - +0.8
2,802,210 + -0.2
2,802,210 + -0.2
2,802,210 + +0.0
2,802,210 + +0.5
2,802,210 + -1.5
2,802,218 - -0.5
2,802,218 - +0.2
2,802,218 - -0.1
2,802,218 - -1.2
2,802,232 + +0.2
2,802,245 + +0.3
2,802,245 + -0.2
2,802,245 + -0.6
2,802,253 - -1.1
2,802,260 - +0.4
2,802,265 + +0.7
2,802,265 + -0.4
2,802,273 - +0.5
2,802,405 + +0.6
2,802,406 - +0.3
2,802,406 - +0.3
2,802,455 - +0.5

Or see this region's nucleotide sequence