Experiment: R2A with Vogels_fungal_media 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS13415 and BWI76_RS13420 overlap by 11 nucleotides BWI76_RS13420 and BWI76_RS13425 are separated by 22 nucleotides
BWI76_RS13415: BWI76_RS13415 - spermidine/putrescine ABC transporter permease, at 2,798,280 to 2,799,209
_RS13415
BWI76_RS13420: BWI76_RS13420 - ABC transporter permease, at 2,799,199 to 2,800,005
_RS13420
BWI76_RS13425: BWI76_RS13425 - 1-pyrroline dehydrogenase, at 2,800,028 to 2,801,455
_RS13425
Position (kb)
2800
2801
2802 Strain fitness (log2 ratio)
-1
0
1 at 2799.088 kb on + strand, within BWI76_RS13415 at 2799.296 kb on - strand, within BWI76_RS13420 at 2799.351 kb on + strand, within BWI76_RS13420 at 2800.018 kb on + strand at 2800.059 kb on - strand at 2800.147 kb on + strand at 2800.309 kb on - strand, within BWI76_RS13425 at 2800.758 kb on + strand, within BWI76_RS13425 at 2800.823 kb on - strand, within BWI76_RS13425 at 2800.846 kb on + strand, within BWI76_RS13425 at 2800.890 kb on - strand, within BWI76_RS13425 at 2801.218 kb on - strand, within BWI76_RS13425 at 2801.263 kb on - strand, within BWI76_RS13425 at 2801.389 kb on + strand at 2801.413 kb on + strand at 2801.576 kb on + strand at 2801.689 kb on + strand at 2801.696 kb on - strand at 2801.722 kb on - strand at 2801.746 kb on + strand at 2801.746 kb on + strand at 2801.750 kb on - strand at 2801.855 kb on - strand at 2802.065 kb on - strand at 2802.194 kb on - strand at 2802.210 kb on + strand at 2802.210 kb on + strand at 2802.210 kb on + strand at 2802.210 kb on + strand at 2802.210 kb on + strand at 2802.218 kb on - strand at 2802.218 kb on - strand at 2802.218 kb on - strand at 2802.218 kb on - strand at 2802.232 kb on + strand at 2802.245 kb on + strand at 2802.245 kb on + strand at 2802.245 kb on + strand at 2802.253 kb on - strand at 2802.260 kb on - strand at 2802.265 kb on + strand at 2802.265 kb on + strand at 2802.273 kb on - strand at 2802.405 kb on + strand at 2802.406 kb on - strand at 2802.406 kb on - strand at 2802.455 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.8X remove 2,799,088 + BWI76_RS13415 0.87 -0.3 2,799,296 - BWI76_RS13420 0.12 -0.1 2,799,351 + BWI76_RS13420 0.19 -0.4 2,800,018 + -0.0 2,800,059 - +0.5 2,800,147 + -0.1 2,800,309 - BWI76_RS13425 0.20 -0.6 2,800,758 + BWI76_RS13425 0.51 -1.1 2,800,823 - BWI76_RS13425 0.56 -0.1 2,800,846 + BWI76_RS13425 0.57 -1.3 2,800,890 - BWI76_RS13425 0.60 +0.3 2,801,218 - BWI76_RS13425 0.83 -1.5 2,801,263 - BWI76_RS13425 0.86 -0.2 2,801,389 + -0.4 2,801,413 + -1.2 2,801,576 + +0.2 2,801,689 + +0.4 2,801,696 - +0.1 2,801,722 - -0.0 2,801,746 + +0.1 2,801,746 + -0.5 2,801,750 - -0.9 2,801,855 - +0.8 2,802,065 - -0.8 2,802,194 - +0.8 2,802,210 + -0.2 2,802,210 + -0.2 2,802,210 + +0.0 2,802,210 + +0.5 2,802,210 + -1.5 2,802,218 - -0.5 2,802,218 - +0.2 2,802,218 - -0.1 2,802,218 - -1.2 2,802,232 + +0.2 2,802,245 + +0.3 2,802,245 + -0.2 2,802,245 + -0.6 2,802,253 - -1.1 2,802,260 - +0.4 2,802,265 + +0.7 2,802,265 + -0.4 2,802,273 - +0.5 2,802,405 + +0.6 2,802,406 - +0.3 2,802,406 - +0.3 2,802,455 - +0.5
Or see this region's nucleotide sequence