Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS06205

Experiment: R2A with Vogels_fungal_media 0.2X

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS06195 and BWI76_RS06200 are separated by 87 nucleotidesBWI76_RS06200 and BWI76_RS06205 are separated by 45 nucleotidesBWI76_RS06205 and BWI76_RS06210 are separated by 37 nucleotides BWI76_RS06195: BWI76_RS06195 - hypothetical protein, at 1,299,436 to 1,300,101 _RS06195 BWI76_RS06200: BWI76_RS06200 - hypothetical protein, at 1,300,189 to 1,300,473 _RS06200 BWI76_RS06205: BWI76_RS06205 - recombination-associated protein RdgC, at 1,300,519 to 1,301,430 _RS06205 BWI76_RS06210: BWI76_RS06210 - fructokinase, at 1,301,468 to 1,302,426 _RS06210 Position (kb) 1300 1301 1302Strain fitness (log2 ratio) -1 0 1 2at 1299.630 kb on + strand, within BWI76_RS06195at 1299.663 kb on - strand, within BWI76_RS06195at 1299.665 kb on + strand, within BWI76_RS06195at 1299.717 kb on + strand, within BWI76_RS06195at 1299.773 kb on + strand, within BWI76_RS06195at 1299.809 kb on + strand, within BWI76_RS06195at 1299.809 kb on + strand, within BWI76_RS06195at 1299.817 kb on - strand, within BWI76_RS06195at 1299.891 kb on + strand, within BWI76_RS06195at 1299.902 kb on + strand, within BWI76_RS06195at 1300.156 kb on - strandat 1300.179 kb on - strandat 1300.250 kb on + strand, within BWI76_RS06200at 1300.448 kb on + strandat 1300.664 kb on - strand, within BWI76_RS06205at 1300.989 kb on - strand, within BWI76_RS06205at 1301.100 kb on - strand, within BWI76_RS06205at 1301.333 kb on + strand, within BWI76_RS06205at 1301.688 kb on + strand, within BWI76_RS06210at 1301.740 kb on - strand, within BWI76_RS06210at 1302.125 kb on + strand, within BWI76_RS06210at 1302.146 kb on + strand, within BWI76_RS06210at 1302.154 kb on - strand, within BWI76_RS06210at 1302.308 kb on - strand, within BWI76_RS06210at 1302.308 kb on - strand, within BWI76_RS06210

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.2X
remove
1,299,630 + BWI76_RS06195 0.29 +0.2
1,299,663 - BWI76_RS06195 0.34 +0.4
1,299,665 + BWI76_RS06195 0.34 +0.2
1,299,717 + BWI76_RS06195 0.42 +0.9
1,299,773 + BWI76_RS06195 0.51 -0.4
1,299,809 + BWI76_RS06195 0.56 -0.2
1,299,809 + BWI76_RS06195 0.56 +0.8
1,299,817 - BWI76_RS06195 0.57 +0.1
1,299,891 + BWI76_RS06195 0.68 +0.3
1,299,902 + BWI76_RS06195 0.70 -0.3
1,300,156 - +0.6
1,300,179 - -0.1
1,300,250 + BWI76_RS06200 0.21 +0.1
1,300,448 + +0.7
1,300,664 - BWI76_RS06205 0.16 -0.4
1,300,989 - BWI76_RS06205 0.52 +0.2
1,301,100 - BWI76_RS06205 0.64 -0.8
1,301,333 + BWI76_RS06205 0.89 -0.3
1,301,688 + BWI76_RS06210 0.23 -0.3
1,301,740 - BWI76_RS06210 0.28 +1.8
1,302,125 + BWI76_RS06210 0.69 -0.3
1,302,146 + BWI76_RS06210 0.71 -0.3
1,302,154 - BWI76_RS06210 0.72 -0.2
1,302,308 - BWI76_RS06210 0.88 -0.7
1,302,308 - BWI76_RS06210 0.88 -0.2

Or see this region's nucleotide sequence