Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26195 and BWI76_RS26200 are separated by 15 nucleotides BWI76_RS26200 and BWI76_RS26205 overlap by 1 nucleotides
BWI76_RS26195: BWI76_RS26195 - glycogen phosphorylase, at 5,416,992 to 5,419,439
_RS26195
BWI76_RS26200: BWI76_RS26200 - starch synthase, at 5,419,455 to 5,420,888
_RS26200
BWI76_RS26205: BWI76_RS26205 - glucose-1-phosphate adenylyltransferase, at 5,420,888 to 5,422,183
_RS26205
Position (kb)
5419
5420
5421 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 5418.520 kb on + strand, within BWI76_RS26195 at 5418.538 kb on - strand, within BWI76_RS26195 at 5418.560 kb on - strand, within BWI76_RS26195 at 5418.560 kb on - strand, within BWI76_RS26195 at 5418.684 kb on + strand, within BWI76_RS26195 at 5418.738 kb on + strand, within BWI76_RS26195 at 5418.757 kb on - strand, within BWI76_RS26195 at 5419.143 kb on + strand, within BWI76_RS26195 at 5419.187 kb on + strand, within BWI76_RS26195 at 5419.195 kb on - strand at 5419.272 kb on + strand at 5419.304 kb on + strand at 5419.378 kb on + strand at 5419.408 kb on - strand at 5420.112 kb on - strand, within BWI76_RS26200 at 5420.273 kb on - strand, within BWI76_RS26200 at 5420.275 kb on + strand, within BWI76_RS26200 at 5420.280 kb on + strand, within BWI76_RS26200 at 5420.283 kb on - strand, within BWI76_RS26200 at 5420.578 kb on + strand, within BWI76_RS26200 at 5420.670 kb on - strand, within BWI76_RS26200 at 5420.724 kb on - strand, within BWI76_RS26200 at 5420.852 kb on + strand at 5420.869 kb on - strand at 5420.896 kb on + strand at 5420.904 kb on - strand at 5421.000 kb on + strand at 5421.506 kb on - strand, within BWI76_RS26205 at 5421.640 kb on + strand, within BWI76_RS26205 at 5421.648 kb on - strand, within BWI76_RS26205
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X remove 5,418,520 + BWI76_RS26195 0.62 +1.0 5,418,538 - BWI76_RS26195 0.63 +2.0 5,418,560 - BWI76_RS26195 0.64 -0.3 5,418,560 - BWI76_RS26195 0.64 +0.0 5,418,684 + BWI76_RS26195 0.69 +0.7 5,418,738 + BWI76_RS26195 0.71 +0.4 5,418,757 - BWI76_RS26195 0.72 +0.1 5,419,143 + BWI76_RS26195 0.88 -0.4 5,419,187 + BWI76_RS26195 0.90 +0.2 5,419,195 - -0.3 5,419,272 + -0.2 5,419,304 + -0.1 5,419,378 + -1.6 5,419,408 - -0.1 5,420,112 - BWI76_RS26200 0.46 -1.5 5,420,273 - BWI76_RS26200 0.57 -1.6 5,420,275 + BWI76_RS26200 0.57 -2.1 5,420,280 + BWI76_RS26200 0.58 -1.9 5,420,283 - BWI76_RS26200 0.58 -2.0 5,420,578 + BWI76_RS26200 0.78 -1.2 5,420,670 - BWI76_RS26200 0.85 +1.4 5,420,724 - BWI76_RS26200 0.88 +0.7 5,420,852 + +0.3 5,420,869 - +0.5 5,420,896 + -3.0 5,420,904 - -1.2 5,421,000 + +1.0 5,421,506 - BWI76_RS26205 0.48 +0.8 5,421,640 + BWI76_RS26205 0.58 -0.8 5,421,648 - BWI76_RS26205 0.59 -0.1
Or see this region's nucleotide sequence