Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26115 and BWI76_RS26120 overlap by 4 nucleotides BWI76_RS26120 and BWI76_RS26125 are separated by 117 nucleotides BWI76_RS26125 and BWI76_RS26130 are separated by 44 nucleotides BWI76_RS26130 and BWI76_RS26135 are separated by 331 nucleotides
BWI76_RS26115: BWI76_RS26115 - hypothetical protein, at 5,394,094 to 5,394,627
_RS26115
BWI76_RS26120: BWI76_RS26120 - hypothetical protein, at 5,394,624 to 5,395,415
_RS26120
BWI76_RS26125: BWI76_RS26125 - carboxypeptidase/penicillin-binding protein 1A, at 5,395,533 to 5,398,091
_RS26125
BWI76_RS26130: BWI76_RS26130 - ADP compounds hydrolase NudE, at 5,398,136 to 5,398,696
_RS26130
BWI76_RS26135: BWI76_RS26135 - Intracellular growth attenuator protein igaA, at 5,399,028 to 5,401,157
_RS26135
Position (kb) 5395
5396
5397
5398
5399 Strain fitness (log2 ratio) -1
0
1
2 at 5394.622 kb on + strand at 5394.664 kb on - strand at 5394.887 kb on + strand, within BWI76_RS26120 at 5395.067 kb on + strand, within BWI76_RS26120 at 5395.315 kb on - strand, within BWI76_RS26120 at 5395.322 kb on + strand, within BWI76_RS26120 at 5395.471 kb on + strand at 5395.580 kb on + strand at 5395.580 kb on + strand at 5395.588 kb on - strand at 5395.636 kb on - strand at 5395.646 kb on + strand at 5395.654 kb on + strand at 5395.734 kb on - strand at 5396.697 kb on + strand, within BWI76_RS26125 at 5396.761 kb on - strand, within BWI76_RS26125 at 5396.761 kb on - strand, within BWI76_RS26125 at 5396.779 kb on - strand, within BWI76_RS26125 at 5396.796 kb on - strand, within BWI76_RS26125 at 5396.886 kb on + strand, within BWI76_RS26125 at 5396.942 kb on + strand, within BWI76_RS26125 at 5396.950 kb on - strand, within BWI76_RS26125 at 5396.952 kb on + strand, within BWI76_RS26125 at 5396.993 kb on - strand, within BWI76_RS26125 at 5397.181 kb on + strand, within BWI76_RS26125 at 5397.488 kb on + strand, within BWI76_RS26125 at 5397.567 kb on + strand, within BWI76_RS26125 at 5397.690 kb on + strand, within BWI76_RS26125 at 5397.887 kb on + strand at 5398.484 kb on - strand, within BWI76_RS26130 at 5398.513 kb on + strand, within BWI76_RS26130 at 5398.609 kb on - strand, within BWI76_RS26130 at 5398.744 kb on + strand at 5398.891 kb on + strand at 5398.899 kb on - strand at 5398.899 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X remove 5,394,622 + +0.0 5,394,664 - +0.2 5,394,887 + BWI76_RS26120 0.33 -0.0 5,395,067 + BWI76_RS26120 0.56 -0.4 5,395,315 - BWI76_RS26120 0.87 -1.7 5,395,322 + BWI76_RS26120 0.88 -0.0 5,395,471 + -0.3 5,395,580 + -0.2 5,395,580 + -0.4 5,395,588 - -0.4 5,395,636 - -0.3 5,395,646 + +0.8 5,395,654 + +0.4 5,395,734 - +0.6 5,396,697 + BWI76_RS26125 0.45 +2.3 5,396,761 - BWI76_RS26125 0.48 +1.4 5,396,761 - BWI76_RS26125 0.48 +0.9 5,396,779 - BWI76_RS26125 0.49 +0.3 5,396,796 - BWI76_RS26125 0.49 +0.6 5,396,886 + BWI76_RS26125 0.53 +0.5 5,396,942 + BWI76_RS26125 0.55 -0.4 5,396,950 - BWI76_RS26125 0.55 +0.1 5,396,952 + BWI76_RS26125 0.55 +0.1 5,396,993 - BWI76_RS26125 0.57 -0.4 5,397,181 + BWI76_RS26125 0.64 +1.1 5,397,488 + BWI76_RS26125 0.76 +0.7 5,397,567 + BWI76_RS26125 0.79 +0.1 5,397,690 + BWI76_RS26125 0.84 +0.3 5,397,887 + +1.1 5,398,484 - BWI76_RS26130 0.62 -0.4 5,398,513 + BWI76_RS26130 0.67 +0.2 5,398,609 - BWI76_RS26130 0.84 -1.4 5,398,744 + -0.9 5,398,891 + +1.0 5,398,899 - +0.6 5,398,899 - +1.1
Or see this region's nucleotide sequence