Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS24270 and BWI76_RS24275 are separated by 142 nucleotides BWI76_RS24275 and BWI76_RS24280 are separated by 6 nucleotides BWI76_RS24280 and BWI76_RS24285 are separated by 251 nucleotides
BWI76_RS24270: BWI76_RS24270 - membrane protein, at 5,057,270 to 5,057,764
_RS24270
BWI76_RS24275: BWI76_RS24275 - biopolymer transport protein ExbD, at 5,057,907 to 5,058,332
_RS24275
BWI76_RS24280: BWI76_RS24280 - biopolymer transporter ExbB, at 5,058,339 to 5,059,070
_RS24280
BWI76_RS24285: BWI76_RS24285 - cystathionine beta-lyase, at 5,059,322 to 5,060,509
_RS24285
Position (kb) 5058
5059
5060 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5057.357 kb on - strand, within BWI76_RS24270 at 5057.554 kb on + strand, within BWI76_RS24270 at 5057.598 kb on + strand, within BWI76_RS24270 at 5057.690 kb on - strand, within BWI76_RS24270 at 5057.794 kb on + strand at 5057.794 kb on + strand at 5057.872 kb on + strand at 5057.879 kb on - strand at 5057.974 kb on + strand, within BWI76_RS24275 at 5057.988 kb on - strand, within BWI76_RS24275 at 5058.135 kb on - strand, within BWI76_RS24275 at 5058.382 kb on - strand at 5058.598 kb on - strand, within BWI76_RS24280 at 5058.746 kb on + strand, within BWI76_RS24280 at 5058.805 kb on - strand, within BWI76_RS24280 at 5058.990 kb on + strand, within BWI76_RS24280 at 5059.184 kb on + strand at 5059.256 kb on - strand at 5059.334 kb on + strand at 5059.336 kb on + strand at 5059.387 kb on - strand at 5059.546 kb on - strand, within BWI76_RS24285 at 5059.639 kb on + strand, within BWI76_RS24285 at 5059.658 kb on - strand, within BWI76_RS24285 at 5059.746 kb on + strand, within BWI76_RS24285 at 5059.750 kb on + strand, within BWI76_RS24285 at 5059.900 kb on + strand, within BWI76_RS24285
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X remove 5,057,357 - BWI76_RS24270 0.18 -0.6 5,057,554 + BWI76_RS24270 0.57 -0.7 5,057,598 + BWI76_RS24270 0.66 -0.5 5,057,690 - BWI76_RS24270 0.85 +0.1 5,057,794 + +0.8 5,057,794 + +0.2 5,057,872 + -0.1 5,057,879 - -2.0 5,057,974 + BWI76_RS24275 0.16 -2.8 5,057,988 - BWI76_RS24275 0.19 -3.2 5,058,135 - BWI76_RS24275 0.54 -2.0 5,058,382 - -2.4 5,058,598 - BWI76_RS24280 0.35 -3.3 5,058,746 + BWI76_RS24280 0.56 -1.4 5,058,805 - BWI76_RS24280 0.64 -2.8 5,058,990 + BWI76_RS24280 0.89 -2.8 5,059,184 + -0.8 5,059,256 - +0.6 5,059,334 + +0.1 5,059,336 + -0.7 5,059,387 - -0.9 5,059,546 - BWI76_RS24285 0.19 -1.0 5,059,639 + BWI76_RS24285 0.27 -0.0 5,059,658 - BWI76_RS24285 0.28 +0.1 5,059,746 + BWI76_RS24285 0.36 -0.1 5,059,750 + BWI76_RS24285 0.36 +0.3 5,059,900 + BWI76_RS24285 0.49 -0.4
Or see this region's nucleotide sequence