Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS21095 and BWI76_RS21100 are separated by 288 nucleotides BWI76_RS21100 and BWI76_RS21105 are separated by 162 nucleotides BWI76_RS21105 and BWI76_RS21110 are separated by 0 nucleotides
BWI76_RS21095: BWI76_RS21095 - bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN, at 4,413,632 to 4,414,798
_RS21095
BWI76_RS21100: BWI76_RS21100 - nucleoside-diphosphate kinase, at 4,415,087 to 4,415,518
_RS21100
BWI76_RS21105: BWI76_RS21105 - penicillin-binding protein 1C, at 4,415,681 to 4,418,005
_RS21105
BWI76_RS21110: BWI76_RS21110 - hypothetical protein, at 4,418,006 to 4,422,952
_RS21110
Position (kb) 4415
4416
4417
4418
4419 Strain fitness (log2 ratio) -1
0
1 at 4414.713 kb on - strand at 4414.713 kb on - strand at 4414.765 kb on - strand at 4414.961 kb on - strand at 4414.963 kb on - strand at 4415.308 kb on + strand, within BWI76_RS21100 at 4415.391 kb on - strand, within BWI76_RS21100 at 4415.556 kb on - strand at 4415.570 kb on - strand at 4415.775 kb on - strand at 4415.775 kb on - strand at 4415.880 kb on + strand at 4416.032 kb on - strand, within BWI76_RS21105 at 4416.244 kb on - strand, within BWI76_RS21105 at 4416.293 kb on + strand, within BWI76_RS21105 at 4416.663 kb on + strand, within BWI76_RS21105 at 4416.812 kb on - strand, within BWI76_RS21105 at 4417.347 kb on - strand, within BWI76_RS21105 at 4417.859 kb on - strand at 4418.403 kb on - strand at 4418.587 kb on - strand, within BWI76_RS21110 at 4418.675 kb on - strand, within BWI76_RS21110 at 4418.802 kb on + strand, within BWI76_RS21110 at 4418.970 kb on + strand, within BWI76_RS21110
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X remove 4,414,713 - -1.2 4,414,713 - +0.9 4,414,765 - +0.8 4,414,961 - -0.6 4,414,963 - -0.3 4,415,308 + BWI76_RS21100 0.51 +0.3 4,415,391 - BWI76_RS21100 0.70 +0.4 4,415,556 - -0.1 4,415,570 - +0.4 4,415,775 - +0.7 4,415,775 - +1.3 4,415,880 + +1.0 4,416,032 - BWI76_RS21105 0.15 +1.0 4,416,244 - BWI76_RS21105 0.24 +0.8 4,416,293 + BWI76_RS21105 0.26 +0.9 4,416,663 + BWI76_RS21105 0.42 +1.0 4,416,812 - BWI76_RS21105 0.49 +1.0 4,417,347 - BWI76_RS21105 0.72 +1.1 4,417,859 - +0.8 4,418,403 - +0.9 4,418,587 - BWI76_RS21110 0.12 +0.8 4,418,675 - BWI76_RS21110 0.14 +0.9 4,418,802 + BWI76_RS21110 0.16 +0.6 4,418,970 + BWI76_RS21110 0.19 +1.3
Or see this region's nucleotide sequence