Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS17790

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS17780 and BWI76_RS17785 are separated by 23 nucleotidesBWI76_RS17785 and BWI76_RS17790 are separated by 3 nucleotidesBWI76_RS17790 and BWI76_RS17795 are separated by 68 nucleotides BWI76_RS17780: BWI76_RS17780 - septum formation inhibitor, at 3,696,056 to 3,696,754 _RS17780 BWI76_RS17785: BWI76_RS17785 - septum site-determining protein MinD, at 3,696,778 to 3,697,590 _RS17785 BWI76_RS17790: BWI76_RS17790 - cell division topological specificity factor, at 3,697,594 to 3,697,863 _RS17790 BWI76_RS17795: BWI76_RS17795 - ribonuclease D, at 3,697,932 to 3,699,059 _RS17795 Position (kb) 3697 3698Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3696.720 kb on - strandat 3696.851 kb on - strandat 3696.914 kb on - strand, within BWI76_RS17785at 3697.023 kb on + strand, within BWI76_RS17785at 3697.078 kb on + strand, within BWI76_RS17785at 3697.086 kb on - strand, within BWI76_RS17785at 3697.210 kb on - strand, within BWI76_RS17785at 3697.436 kb on + strand, within BWI76_RS17785at 3697.436 kb on + strand, within BWI76_RS17785at 3697.436 kb on + strand, within BWI76_RS17785at 3697.444 kb on - strand, within BWI76_RS17785at 3697.925 kb on + strandat 3698.089 kb on - strand, within BWI76_RS17795at 3698.670 kb on - strand, within BWI76_RS17795at 3698.717 kb on - strand, within BWI76_RS17795

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
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3,696,720 - -0.8
3,696,851 - -1.7
3,696,914 - BWI76_RS17785 0.17 -4.2
3,697,023 + BWI76_RS17785 0.30 -2.7
3,697,078 + BWI76_RS17785 0.37 -1.9
3,697,086 - BWI76_RS17785 0.38 -1.5
3,697,210 - BWI76_RS17785 0.53 -0.6
3,697,436 + BWI76_RS17785 0.81 -1.6
3,697,436 + BWI76_RS17785 0.81 -2.2
3,697,436 + BWI76_RS17785 0.81 -0.6
3,697,444 - BWI76_RS17785 0.82 -2.4
3,697,925 + -0.4
3,698,089 - BWI76_RS17795 0.14 -1.2
3,698,670 - BWI76_RS17795 0.65 +0.3
3,698,717 - BWI76_RS17795 0.70 +0.7

Or see this region's nucleotide sequence