Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS13090

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS13085 and BWI76_RS13090 are separated by 286 nucleotidesBWI76_RS13090 and BWI76_RS13095 are separated by 11 nucleotidesBWI76_RS13095 and BWI76_RS13100 are separated by 7 nucleotides BWI76_RS13085: BWI76_RS13085 - bifunctional oxepin-CoA hydrolase/3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase, at 2,729,458 to 2,731,503 _RS13085 BWI76_RS13090: BWI76_RS13090 - phenylacetate-CoA oxygenase subunit PaaA, at 2,731,790 to 2,732,719 _RS13090 BWI76_RS13095: BWI76_RS13095 - phenylacetate-CoA oxygenase subunit PaaB, at 2,732,731 to 2,733,018 _RS13095 BWI76_RS13100: BWI76_RS13100 - phenylacetate-CoA oxygenase subunit PaaI, at 2,733,026 to 2,733,781 _RS13100 Position (kb) 2731 2732 2733Strain fitness (log2 ratio) -2 -1 0 1at 2731.077 kb on - strand, within BWI76_RS13085at 2731.806 kb on + strandat 2731.992 kb on - strand, within BWI76_RS13090at 2732.023 kb on - strand, within BWI76_RS13090at 2732.123 kb on + strand, within BWI76_RS13090at 2732.224 kb on - strand, within BWI76_RS13090at 2732.879 kb on + strand, within BWI76_RS13095at 2732.982 kb on + strand, within BWI76_RS13095at 2732.990 kb on - strandat 2733.007 kb on + strandat 2733.042 kb on - strandat 2733.362 kb on + strand, within BWI76_RS13100at 2733.402 kb on + strand, within BWI76_RS13100at 2733.453 kb on + strand, within BWI76_RS13100at 2733.541 kb on + strand, within BWI76_RS13100at 2733.580 kb on + strand, within BWI76_RS13100at 2733.580 kb on + strand, within BWI76_RS13100

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
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2,731,077 - BWI76_RS13085 0.79 -1.6
2,731,806 + +0.0
2,731,992 - BWI76_RS13090 0.22 -1.1
2,732,023 - BWI76_RS13090 0.25 -2.2
2,732,123 + BWI76_RS13090 0.36 +0.5
2,732,224 - BWI76_RS13090 0.47 -0.2
2,732,879 + BWI76_RS13095 0.51 -1.1
2,732,982 + BWI76_RS13095 0.87 +0.6
2,732,990 - +0.1
2,733,007 + +0.4
2,733,042 - +0.3
2,733,362 + BWI76_RS13100 0.44 -0.5
2,733,402 + BWI76_RS13100 0.50 -0.1
2,733,453 + BWI76_RS13100 0.56 +0.1
2,733,541 + BWI76_RS13100 0.68 -0.4
2,733,580 + BWI76_RS13100 0.73 +0.0
2,733,580 + BWI76_RS13100 0.73 +0.6

Or see this region's nucleotide sequence