Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS12615 and BWI76_RS12620 are separated by 158 nucleotides BWI76_RS12620 and BWI76_RS12625 are separated by 102 nucleotides
BWI76_RS12615: BWI76_RS12615 - LysR family transcriptional regulator, at 2,632,949 to 2,633,860
_RS12615
BWI76_RS12620: BWI76_RS12620 - 2-nitropropane dioxygenase, at 2,634,019 to 2,634,999
_RS12620
BWI76_RS12625: BWI76_RS12625 - isoflavone reductase, at 2,635,102 to 2,636,031
_RS12625
Position (kb)
2634
2635 Strain fitness (log2 ratio)
-1
0
1 at 2633.143 kb on - strand, within BWI76_RS12615 at 2633.145 kb on + strand, within BWI76_RS12615 at 2633.596 kb on + strand, within BWI76_RS12615 at 2633.609 kb on - strand, within BWI76_RS12615 at 2633.721 kb on + strand, within BWI76_RS12615 at 2633.726 kb on + strand, within BWI76_RS12615 at 2633.729 kb on - strand, within BWI76_RS12615 at 2633.954 kb on + strand at 2633.962 kb on - strand at 2634.002 kb on - strand at 2634.265 kb on - strand, within BWI76_RS12620 at 2634.265 kb on - strand, within BWI76_RS12620 at 2634.347 kb on + strand, within BWI76_RS12620 at 2634.382 kb on - strand, within BWI76_RS12620 at 2634.382 kb on - strand, within BWI76_RS12620 at 2634.382 kb on - strand, within BWI76_RS12620 at 2634.392 kb on - strand, within BWI76_RS12620 at 2634.621 kb on + strand, within BWI76_RS12620 at 2634.907 kb on + strand at 2635.013 kb on - strand at 2635.044 kb on + strand at 2635.131 kb on - strand at 2635.194 kb on - strand at 2635.196 kb on - strand, within BWI76_RS12625 at 2635.270 kb on - strand, within BWI76_RS12625 at 2635.287 kb on + strand, within BWI76_RS12625 at 2635.319 kb on - strand, within BWI76_RS12625 at 2635.365 kb on + strand, within BWI76_RS12625 at 2635.425 kb on - strand, within BWI76_RS12625 at 2635.438 kb on - strand, within BWI76_RS12625 at 2635.558 kb on + strand, within BWI76_RS12625 at 2635.698 kb on - strand, within BWI76_RS12625 at 2635.709 kb on + strand, within BWI76_RS12625
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X remove 2,633,143 - BWI76_RS12615 0.21 +0.5 2,633,145 + BWI76_RS12615 0.21 +0.1 2,633,596 + BWI76_RS12615 0.71 -0.7 2,633,609 - BWI76_RS12615 0.72 -0.8 2,633,721 + BWI76_RS12615 0.85 +0.5 2,633,726 + BWI76_RS12615 0.85 +0.8 2,633,729 - BWI76_RS12615 0.86 -0.3 2,633,954 + -0.4 2,633,962 - -1.0 2,634,002 - +0.5 2,634,265 - BWI76_RS12620 0.25 -0.9 2,634,265 - BWI76_RS12620 0.25 -1.1 2,634,347 + BWI76_RS12620 0.33 -1.0 2,634,382 - BWI76_RS12620 0.37 -0.0 2,634,382 - BWI76_RS12620 0.37 -1.5 2,634,382 - BWI76_RS12620 0.37 -1.1 2,634,392 - BWI76_RS12620 0.38 -0.5 2,634,621 + BWI76_RS12620 0.61 -1.2 2,634,907 + +0.1 2,635,013 - +0.2 2,635,044 + -0.1 2,635,131 - -0.8 2,635,194 - +0.0 2,635,196 - BWI76_RS12625 0.10 +0.8 2,635,270 - BWI76_RS12625 0.18 -0.2 2,635,287 + BWI76_RS12625 0.20 -1.2 2,635,319 - BWI76_RS12625 0.23 +0.2 2,635,365 + BWI76_RS12625 0.28 -0.5 2,635,425 - BWI76_RS12625 0.35 +0.7 2,635,438 - BWI76_RS12625 0.36 +0.3 2,635,558 + BWI76_RS12625 0.49 +0.6 2,635,698 - BWI76_RS12625 0.64 -0.1 2,635,709 + BWI76_RS12625 0.65 +1.4
Or see this region's nucleotide sequence