Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS11135

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS11130 and BWI76_RS11135 are separated by 102 nucleotidesBWI76_RS11135 and BWI76_RS11140 are separated by 103 nucleotidesBWI76_RS11140 and BWI76_RS11145 overlap by 2 nucleotidesBWI76_RS11145 and BWI76_RS11150 are separated by 5 nucleotides BWI76_RS11130: BWI76_RS11130 - PTS glucose transporter subunit IIBC, at 2,346,561 to 2,347,994 _RS11130 BWI76_RS11135: BWI76_RS11135 - ferric-rhodotorulic acid/ferric-coprogen receptor FhuE, at 2,348,097 to 2,350,283 _RS11135 BWI76_RS11140: BWI76_RS11140 - hypothetical protein, at 2,350,387 to 2,350,635 _RS11140 BWI76_RS11145: BWI76_RS11145 - histidine triad nucleotide-binding protein, at 2,350,634 to 2,350,990 _RS11145 BWI76_RS11150: BWI76_RS11150 - membrane protein, at 2,350,996 to 2,351,370 _RS11150 Position (kb) 2348 2349 2350 2351Strain fitness (log2 ratio) -3 -2 -1 0 1at 2347.171 kb on + strand, within BWI76_RS11130at 2347.272 kb on - strand, within BWI76_RS11130at 2347.279 kb on + strand, within BWI76_RS11130at 2347.442 kb on - strand, within BWI76_RS11130at 2347.518 kb on + strand, within BWI76_RS11130at 2347.526 kb on - strand, within BWI76_RS11130at 2347.736 kb on - strand, within BWI76_RS11130at 2348.199 kb on - strandat 2348.210 kb on - strandat 2348.255 kb on + strandat 2348.408 kb on + strand, within BWI76_RS11135at 2348.416 kb on - strand, within BWI76_RS11135at 2348.416 kb on - strand, within BWI76_RS11135at 2348.467 kb on - strand, within BWI76_RS11135at 2348.748 kb on + strand, within BWI76_RS11135at 2348.765 kb on - strand, within BWI76_RS11135at 2349.072 kb on + strand, within BWI76_RS11135at 2349.085 kb on - strand, within BWI76_RS11135at 2349.811 kb on + strand, within BWI76_RS11135at 2349.968 kb on + strand, within BWI76_RS11135at 2351.192 kb on - strand, within BWI76_RS11150

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
remove
2,347,171 + BWI76_RS11130 0.43 +0.3
2,347,272 - BWI76_RS11130 0.50 -0.9
2,347,279 + BWI76_RS11130 0.50 -0.8
2,347,442 - BWI76_RS11130 0.61 +0.1
2,347,518 + BWI76_RS11130 0.67 +0.3
2,347,526 - BWI76_RS11130 0.67 -0.4
2,347,736 - BWI76_RS11130 0.82 -0.7
2,348,199 - +0.4
2,348,210 - -1.0
2,348,255 + -1.3
2,348,408 + BWI76_RS11135 0.14 -0.2
2,348,416 - BWI76_RS11135 0.15 -2.9
2,348,416 - BWI76_RS11135 0.15 -0.7
2,348,467 - BWI76_RS11135 0.17 -1.5
2,348,748 + BWI76_RS11135 0.30 -1.6
2,348,765 - BWI76_RS11135 0.31 -2.2
2,349,072 + BWI76_RS11135 0.45 -2.5
2,349,085 - BWI76_RS11135 0.45 -2.3
2,349,811 + BWI76_RS11135 0.78 -1.1
2,349,968 + BWI76_RS11135 0.86 -0.3
2,351,192 - BWI76_RS11150 0.52 -0.4

Or see this region's nucleotide sequence