Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS09300 and BWI76_RS09305 are separated by 4 nucleotides BWI76_RS09305 and BWI76_RS09310 overlap by 4 nucleotides BWI76_RS09310 and BWI76_RS09315 overlap by 71 nucleotides BWI76_RS09315 and BWI76_RS09320 overlap by 38 nucleotides BWI76_RS09320 and BWI76_RS09325 overlap by 8 nucleotides BWI76_RS09325 and BWI76_RS09330 are separated by 68 nucleotides
BWI76_RS09300: BWI76_RS09300 - phage lysozyme, at 1,956,578 to 1,957,087
_RS09300
BWI76_RS09305: BWI76_RS09305 - hypothetical protein, at 1,957,092 to 1,957,475
_RS09305
BWI76_RS09310: BWI76_RS09310 - hypothetical protein, at 1,957,472 to 1,957,900
_RS09310
BWI76_RS09315: BWI76_RS09315 - hypothetical protein, at 1,957,830 to 1,958,033
_RS09315
BWI76_RS09320: BWI76_RS09320 - P2 phage tail completion protein R, at 1,957,996 to 1,958,427
_RS09320
BWI76_RS09325: BWI76_RS09325 - putative bacteriophage tail completion protein, at 1,958,420 to 1,958,866
_RS09325
BWI76_RS09330: BWI76_RS09330 - baseplate assembly protein V, at 1,958,935 to 1,959,507
_RS09330
Position (kb) 1957
1958
1959 Strain fitness (log2 ratio) -1
0
1 at 1957.127 kb on + strand at 1957.194 kb on + strand, within BWI76_RS09305 at 1957.207 kb on - strand, within BWI76_RS09305 at 1957.282 kb on + strand, within BWI76_RS09305 at 1957.650 kb on - strand, within BWI76_RS09310 at 1957.728 kb on - strand, within BWI76_RS09310 at 1957.922 kb on + strand, within BWI76_RS09315 at 1957.928 kb on + strand, within BWI76_RS09315 at 1958.005 kb on + strand at 1958.055 kb on - strand, within BWI76_RS09320 at 1958.123 kb on + strand, within BWI76_RS09320 at 1958.129 kb on - strand, within BWI76_RS09320 at 1958.149 kb on - strand, within BWI76_RS09320 at 1958.240 kb on + strand, within BWI76_RS09320 at 1958.316 kb on - strand, within BWI76_RS09320 at 1958.364 kb on - strand, within BWI76_RS09320 at 1958.446 kb on - strand at 1958.469 kb on + strand, within BWI76_RS09325 at 1958.476 kb on - strand, within BWI76_RS09325 at 1958.602 kb on + strand, within BWI76_RS09325 at 1958.769 kb on + strand, within BWI76_RS09325 at 1959.352 kb on + strand, within BWI76_RS09330
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X remove 1,957,127 + +0.6 1,957,194 + BWI76_RS09305 0.27 -0.2 1,957,207 - BWI76_RS09305 0.30 +0.8 1,957,282 + BWI76_RS09305 0.49 -0.3 1,957,650 - BWI76_RS09310 0.41 +0.1 1,957,728 - BWI76_RS09310 0.60 -0.4 1,957,922 + BWI76_RS09315 0.45 -1.4 1,957,928 + BWI76_RS09315 0.48 -0.2 1,958,005 + +0.5 1,958,055 - BWI76_RS09320 0.14 -1.7 1,958,123 + BWI76_RS09320 0.29 -1.5 1,958,129 - BWI76_RS09320 0.31 +0.2 1,958,149 - BWI76_RS09320 0.35 -0.8 1,958,240 + BWI76_RS09320 0.56 -1.6 1,958,316 - BWI76_RS09320 0.74 -1.0 1,958,364 - BWI76_RS09320 0.85 -1.2 1,958,446 - -0.1 1,958,469 + BWI76_RS09325 0.11 +1.0 1,958,476 - BWI76_RS09325 0.13 +0.9 1,958,602 + BWI76_RS09325 0.41 -0.4 1,958,769 + BWI76_RS09325 0.78 -0.6 1,959,352 + BWI76_RS09330 0.73 +0.0
Or see this region's nucleotide sequence