Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS08500 and BWI76_RS08505 are separated by 15 nucleotides BWI76_RS08505 and BWI76_RS08510 overlap by 1 nucleotides BWI76_RS08510 and BWI76_RS08515 are separated by 149 nucleotides BWI76_RS08515 and BWI76_RS08520 are separated by 5 nucleotides
BWI76_RS08500: BWI76_RS08500 - cytochrome d ubiquinol oxidase subunit 2, at 1,801,679 to 1,802,818
_RS08500
BWI76_RS08505: BWI76_RS08505 - cytochrome bd-I oxidase subunit CydX, at 1,802,834 to 1,802,947
_RS08505
BWI76_RS08510: BWI76_RS08510 - cyd operon protein YbgE, at 1,802,947 to 1,803,237
_RS08510
BWI76_RS08515: BWI76_RS08515 - acyl-CoA thioesterase YbgC, at 1,803,387 to 1,803,791
_RS08515
BWI76_RS08520: BWI76_RS08520 - colicin transporter TolQ, at 1,803,797 to 1,804,480
_RS08520
Position (kb) 1802
1803
1804 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1802.639 kb on + strand, within BWI76_RS08500 at 1802.734 kb on + strand at 1802.812 kb on + strand at 1802.965 kb on + strand at 1803.068 kb on + strand, within BWI76_RS08510 at 1803.086 kb on - strand, within BWI76_RS08510 at 1803.105 kb on + strand, within BWI76_RS08510 at 1803.125 kb on + strand, within BWI76_RS08510 at 1803.447 kb on + strand, within BWI76_RS08515 at 1803.764 kb on + strand at 1803.812 kb on - strand at 1803.823 kb on + strand at 1804.000 kb on - strand, within BWI76_RS08520
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X remove 1,802,639 + BWI76_RS08500 0.84 -2.5 1,802,734 + -1.0 1,802,812 + +0.2 1,802,965 + +0.3 1,803,068 + BWI76_RS08510 0.42 -0.0 1,803,086 - BWI76_RS08510 0.48 +0.3 1,803,105 + BWI76_RS08510 0.54 +1.1 1,803,125 + BWI76_RS08510 0.61 +0.7 1,803,447 + BWI76_RS08515 0.15 -0.6 1,803,764 + -0.2 1,803,812 - -1.0 1,803,823 + -3.6 1,804,000 - BWI76_RS08520 0.30 -2.4
Or see this region's nucleotide sequence