Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01710 and BWI76_RS01715 are separated by 31 nucleotides BWI76_RS01715 and BWI76_RS01720 overlap by 8 nucleotides BWI76_RS01720 and BWI76_RS01725 are separated by 123 nucleotides BWI76_RS01725 and BWI76_RS01730 are separated by 11 nucleotides
BWI76_RS01710: BWI76_RS01710 - DNA gyrase inhibitor, at 351,356 to 351,673
_RS01710
BWI76_RS01715: BWI76_RS01715 - shikimate 5-dehydrogenase, at 351,705 to 352,514
_RS01715
BWI76_RS01720: BWI76_RS01720 - L-sorbose 1-phosphate reductase (EC 1.1.1.-) <small>(from data)</small>, at 352,507 to 353,736
_RS01720
BWI76_RS01725: BWI76_RS01725 - PTS mannose/fructose/sorbose family transporter subunit IID, at 353,860 to 354,684
_RS01725
BWI76_RS01730: BWI76_RS01730 - PTS mannose/fructose/sorbose transporter subunit IIC, at 354,696 to 355,493
_RS01730
Position (kb) 352
353
354 Strain fitness (log2 ratio) -1
0
1
2 at 351.622 kb on + strand, within BWI76_RS01710 at 351.622 kb on + strand, within BWI76_RS01710 at 351.627 kb on + strand, within BWI76_RS01710 at 351.627 kb on + strand, within BWI76_RS01710 at 351.627 kb on + strand, within BWI76_RS01710 at 351.630 kb on - strand, within BWI76_RS01710 at 351.630 kb on - strand, within BWI76_RS01710 at 351.630 kb on - strand, within BWI76_RS01710 at 351.635 kb on - strand, within BWI76_RS01710 at 351.682 kb on + strand at 351.682 kb on + strand at 351.690 kb on - strand at 351.722 kb on - strand at 351.777 kb on + strand at 351.834 kb on + strand, within BWI76_RS01715 at 351.988 kb on - strand, within BWI76_RS01715 at 351.999 kb on - strand, within BWI76_RS01715 at 352.145 kb on - strand, within BWI76_RS01715 at 352.218 kb on - strand, within BWI76_RS01715 at 352.249 kb on + strand, within BWI76_RS01715 at 352.280 kb on + strand, within BWI76_RS01715 at 352.309 kb on - strand, within BWI76_RS01715 at 352.346 kb on - strand, within BWI76_RS01715 at 352.391 kb on - strand, within BWI76_RS01715 at 352.392 kb on + strand, within BWI76_RS01715 at 352.416 kb on - strand, within BWI76_RS01715 at 352.486 kb on + strand at 352.687 kb on + strand, within BWI76_RS01720 at 352.722 kb on + strand, within BWI76_RS01720 at 352.724 kb on - strand, within BWI76_RS01720 at 352.930 kb on + strand, within BWI76_RS01720 at 353.173 kb on + strand, within BWI76_RS01720 at 353.189 kb on + strand, within BWI76_RS01720 at 353.450 kb on - strand, within BWI76_RS01720 at 353.467 kb on + strand, within BWI76_RS01720 at 353.467 kb on + strand, within BWI76_RS01720 at 353.721 kb on + strand at 353.748 kb on + strand at 353.815 kb on + strand at 353.942 kb on - strand at 353.951 kb on + strand, within BWI76_RS01725 at 353.978 kb on - strand, within BWI76_RS01725 at 353.985 kb on + strand, within BWI76_RS01725 at 353.990 kb on + strand, within BWI76_RS01725 at 354.077 kb on - strand, within BWI76_RS01725 at 354.134 kb on - strand, within BWI76_RS01725 at 354.182 kb on + strand, within BWI76_RS01725 at 354.223 kb on + strand, within BWI76_RS01725 at 354.335 kb on + strand, within BWI76_RS01725 at 354.477 kb on + strand, within BWI76_RS01725 at 354.718 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X remove 351,622 + BWI76_RS01710 0.84 -0.2 351,622 + BWI76_RS01710 0.84 +0.3 351,627 + BWI76_RS01710 0.85 -0.1 351,627 + BWI76_RS01710 0.85 -1.1 351,627 + BWI76_RS01710 0.85 +1.2 351,630 - BWI76_RS01710 0.86 -0.6 351,630 - BWI76_RS01710 0.86 +0.0 351,630 - BWI76_RS01710 0.86 +0.2 351,635 - BWI76_RS01710 0.88 +0.1 351,682 + -1.7 351,682 + -0.5 351,690 - +0.0 351,722 - -0.3 351,777 + -0.3 351,834 + BWI76_RS01715 0.16 +1.2 351,988 - BWI76_RS01715 0.35 +0.0 351,999 - BWI76_RS01715 0.36 +0.3 352,145 - BWI76_RS01715 0.54 +0.3 352,218 - BWI76_RS01715 0.63 -0.9 352,249 + BWI76_RS01715 0.67 -0.3 352,280 + BWI76_RS01715 0.71 -0.9 352,309 - BWI76_RS01715 0.75 +0.1 352,346 - BWI76_RS01715 0.79 -0.1 352,391 - BWI76_RS01715 0.85 +0.2 352,392 + BWI76_RS01715 0.85 +0.0 352,416 - BWI76_RS01715 0.88 -0.0 352,486 + +0.3 352,687 + BWI76_RS01720 0.15 +0.9 352,722 + BWI76_RS01720 0.17 +0.4 352,724 - BWI76_RS01720 0.18 +0.4 352,930 + BWI76_RS01720 0.34 +0.9 353,173 + BWI76_RS01720 0.54 +0.6 353,189 + BWI76_RS01720 0.55 -0.2 353,450 - BWI76_RS01720 0.77 +1.2 353,467 + BWI76_RS01720 0.78 +0.4 353,467 + BWI76_RS01720 0.78 -0.2 353,721 + -0.5 353,748 + -0.9 353,815 + +0.1 353,942 - +0.5 353,951 + BWI76_RS01725 0.11 +0.2 353,978 - BWI76_RS01725 0.14 +0.3 353,985 + BWI76_RS01725 0.15 -0.4 353,990 + BWI76_RS01725 0.16 +2.0 354,077 - BWI76_RS01725 0.26 -0.2 354,134 - BWI76_RS01725 0.33 +1.4 354,182 + BWI76_RS01725 0.39 -0.2 354,223 + BWI76_RS01725 0.44 +0.9 354,335 + BWI76_RS01725 0.58 -0.2 354,477 + BWI76_RS01725 0.75 -0.2 354,718 - +0.4
Or see this region's nucleotide sequence