Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS00495 and BWI76_RS00500 overlap by 8 nucleotides BWI76_RS00500 and BWI76_RS00505 are separated by 11 nucleotides BWI76_RS00505 and BWI76_RS00510 are separated by 13 nucleotides
BWI76_RS00495: BWI76_RS00495 - PTS mannose transporter subunit IID, at 101,771 to 102,613
_RS00495
BWI76_RS00500: BWI76_RS00500 - PTS sorbose IIC component, at 102,606 to 103,409
_RS00500
BWI76_RS00505: BWI76_RS00505 - PTS system, sorbose-specific IIB component, at 103,421 to 103,918
_RS00505
BWI76_RS00510: BWI76_RS00510 - glucuronyl hydrolase, at 103,932 to 105,110
_RS00510
Position (kb) 103
104 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 102.487 kb on - strand, within BWI76_RS00495 at 102.505 kb on - strand, within BWI76_RS00495 at 102.589 kb on + strand at 102.589 kb on + strand at 102.589 kb on + strand at 102.597 kb on - strand at 102.597 kb on - strand at 102.597 kb on - strand at 102.601 kb on + strand at 102.621 kb on - strand at 102.626 kb on + strand at 102.713 kb on - strand, within BWI76_RS00500 at 102.816 kb on - strand, within BWI76_RS00500 at 102.818 kb on - strand, within BWI76_RS00500 at 102.827 kb on + strand, within BWI76_RS00500 at 102.828 kb on - strand, within BWI76_RS00500 at 102.851 kb on + strand, within BWI76_RS00500 at 102.928 kb on + strand, within BWI76_RS00500 at 102.936 kb on - strand, within BWI76_RS00500 at 102.985 kb on + strand, within BWI76_RS00500 at 103.017 kb on + strand, within BWI76_RS00500 at 103.025 kb on - strand, within BWI76_RS00500 at 103.058 kb on + strand, within BWI76_RS00500 at 103.063 kb on + strand, within BWI76_RS00500 at 103.063 kb on + strand, within BWI76_RS00500 at 103.066 kb on - strand, within BWI76_RS00500 at 103.071 kb on - strand, within BWI76_RS00500 at 103.302 kb on - strand, within BWI76_RS00500 at 103.309 kb on + strand, within BWI76_RS00500 at 103.346 kb on + strand at 103.346 kb on + strand at 103.360 kb on + strand at 103.505 kb on + strand, within BWI76_RS00505 at 103.720 kb on - strand, within BWI76_RS00505 at 103.824 kb on - strand, within BWI76_RS00505 at 103.845 kb on + strand, within BWI76_RS00505 at 103.865 kb on - strand, within BWI76_RS00505 at 103.933 kb on - strand at 103.944 kb on + strand at 103.963 kb on - strand at 103.968 kb on + strand at 104.111 kb on + strand, within BWI76_RS00510 at 104.119 kb on - strand, within BWI76_RS00510 at 104.119 kb on - strand, within BWI76_RS00510 at 104.119 kb on - strand, within BWI76_RS00510 at 104.223 kb on - strand, within BWI76_RS00510 at 104.265 kb on + strand, within BWI76_RS00510 at 104.341 kb on + strand, within BWI76_RS00510 at 104.347 kb on - strand, within BWI76_RS00510 at 104.349 kb on - strand, within BWI76_RS00510 at 104.349 kb on - strand, within BWI76_RS00510 at 104.460 kb on - strand, within BWI76_RS00510 at 104.654 kb on - strand, within BWI76_RS00510 at 104.727 kb on - strand, within BWI76_RS00510 at 104.765 kb on - strand, within BWI76_RS00510 at 104.772 kb on - strand, within BWI76_RS00510 at 104.796 kb on - strand, within BWI76_RS00510 at 104.829 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X remove 102,487 - BWI76_RS00495 0.85 +0.7 102,505 - BWI76_RS00495 0.87 +0.3 102,589 + -0.1 102,589 + +2.5 102,589 + +0.4 102,597 - -0.4 102,597 - +0.1 102,597 - +0.6 102,601 + -0.1 102,621 - -0.2 102,626 + +0.1 102,713 - BWI76_RS00500 0.13 +1.0 102,816 - BWI76_RS00500 0.26 -0.5 102,818 - BWI76_RS00500 0.26 -0.7 102,827 + BWI76_RS00500 0.27 +1.6 102,828 - BWI76_RS00500 0.28 -0.9 102,851 + BWI76_RS00500 0.30 -0.1 102,928 + BWI76_RS00500 0.40 +0.1 102,936 - BWI76_RS00500 0.41 +0.3 102,985 + BWI76_RS00500 0.47 -0.6 103,017 + BWI76_RS00500 0.51 -1.0 103,025 - BWI76_RS00500 0.52 +0.4 103,058 + BWI76_RS00500 0.56 +0.6 103,063 + BWI76_RS00500 0.57 -0.4 103,063 + BWI76_RS00500 0.57 +0.1 103,066 - BWI76_RS00500 0.57 +0.1 103,071 - BWI76_RS00500 0.58 -0.0 103,302 - BWI76_RS00500 0.87 -0.1 103,309 + BWI76_RS00500 0.87 +0.9 103,346 + -0.0 103,346 + +0.7 103,360 + -0.1 103,505 + BWI76_RS00505 0.17 -1.9 103,720 - BWI76_RS00505 0.60 -1.4 103,824 - BWI76_RS00505 0.81 -0.2 103,845 + BWI76_RS00505 0.85 -0.9 103,865 - BWI76_RS00505 0.89 -3.0 103,933 - -0.3 103,944 + -0.4 103,963 - +1.3 103,968 + +0.5 104,111 + BWI76_RS00510 0.15 +0.3 104,119 - BWI76_RS00510 0.16 -0.7 104,119 - BWI76_RS00510 0.16 +0.3 104,119 - BWI76_RS00510 0.16 +1.1 104,223 - BWI76_RS00510 0.25 -0.1 104,265 + BWI76_RS00510 0.28 -0.9 104,341 + BWI76_RS00510 0.35 -0.7 104,347 - BWI76_RS00510 0.35 -0.4 104,349 - BWI76_RS00510 0.35 +0.1 104,349 - BWI76_RS00510 0.35 +2.5 104,460 - BWI76_RS00510 0.45 -0.2 104,654 - BWI76_RS00510 0.61 +0.5 104,727 - BWI76_RS00510 0.67 +0.5 104,765 - BWI76_RS00510 0.71 -0.1 104,772 - BWI76_RS00510 0.71 -0.3 104,796 - BWI76_RS00510 0.73 +1.2 104,829 + +0.9
Or see this region's nucleotide sequence