Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS00260 and BWI76_RS00265 are separated by 218 nucleotides BWI76_RS00265 and BWI76_RS00270 are separated by 182 nucleotides BWI76_RS00270 and BWI76_RS00275 are separated by 10 nucleotides
BWI76_RS00260: BWI76_RS00260 - ATPase RavA, at 52,540 to 54,039
_RS00260
BWI76_RS00265: BWI76_RS00265 - potassium transporter Kup, at 54,258 to 56,126
_RS00265
BWI76_RS00270: BWI76_RS00270 - D-ribose pyranase (EC 5.4.99.62) <small>(from data)</small>, at 56,309 to 56,728
_RS00270
BWI76_RS00275: BWI76_RS00275 - ribose ABC transporter ATP-binding protein RbsA, at 56,739 to 58,244
_RS00275
Position (kb) 54
55
56
57 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 53.362 kb on + strand, within BWI76_RS00260 at 53.417 kb on - strand, within BWI76_RS00260 at 53.417 kb on - strand, within BWI76_RS00260 at 53.441 kb on + strand, within BWI76_RS00260 at 53.457 kb on - strand, within BWI76_RS00260 at 53.671 kb on - strand, within BWI76_RS00260 at 53.687 kb on + strand, within BWI76_RS00260 at 53.855 kb on - strand, within BWI76_RS00260 at 53.951 kb on - strand at 53.951 kb on - strand at 53.951 kb on - strand at 53.993 kb on + strand at 54.028 kb on + strand at 54.089 kb on - strand at 54.093 kb on + strand at 54.142 kb on + strand at 54.142 kb on + strand at 54.142 kb on + strand at 54.142 kb on + strand at 54.150 kb on - strand at 54.163 kb on + strand at 54.184 kb on + strand at 54.342 kb on + strand at 54.344 kb on + strand at 54.351 kb on - strand at 54.351 kb on - strand at 54.392 kb on + strand at 54.506 kb on - strand, within BWI76_RS00265 at 54.568 kb on + strand, within BWI76_RS00265 at 54.568 kb on + strand, within BWI76_RS00265 at 54.576 kb on - strand at 54.618 kb on + strand, within BWI76_RS00265 at 54.687 kb on - strand, within BWI76_RS00265 at 54.803 kb on + strand, within BWI76_RS00265 at 54.838 kb on - strand, within BWI76_RS00265 at 54.854 kb on - strand, within BWI76_RS00265 at 54.924 kb on - strand, within BWI76_RS00265 at 55.033 kb on + strand, within BWI76_RS00265 at 55.033 kb on + strand, within BWI76_RS00265 at 55.041 kb on - strand, within BWI76_RS00265 at 55.041 kb on - strand, within BWI76_RS00265 at 55.046 kb on - strand, within BWI76_RS00265 at 55.156 kb on - strand, within BWI76_RS00265 at 55.172 kb on - strand, within BWI76_RS00265 at 55.192 kb on - strand, within BWI76_RS00265 at 55.260 kb on + strand, within BWI76_RS00265 at 55.336 kb on + strand, within BWI76_RS00265 at 55.336 kb on + strand, within BWI76_RS00265 at 55.336 kb on + strand at 55.336 kb on + strand, within BWI76_RS00265 at 55.344 kb on - strand, within BWI76_RS00265 at 55.358 kb on + strand, within BWI76_RS00265 at 55.360 kb on + strand, within BWI76_RS00265 at 55.368 kb on - strand, within BWI76_RS00265 at 55.368 kb on - strand, within BWI76_RS00265 at 55.580 kb on - strand, within BWI76_RS00265 at 55.697 kb on - strand, within BWI76_RS00265 at 55.728 kb on + strand, within BWI76_RS00265 at 55.745 kb on + strand, within BWI76_RS00265 at 55.810 kb on + strand, within BWI76_RS00265 at 55.932 kb on + strand, within BWI76_RS00265 at 55.932 kb on + strand, within BWI76_RS00265 at 55.940 kb on - strand at 56.062 kb on + strand at 56.370 kb on - strand, within BWI76_RS00270 at 56.429 kb on + strand, within BWI76_RS00270 at 56.435 kb on + strand, within BWI76_RS00270 at 56.540 kb on - strand, within BWI76_RS00270 at 56.568 kb on + strand, within BWI76_RS00270 at 56.576 kb on - strand, within BWI76_RS00270 at 56.576 kb on - strand, within BWI76_RS00270 at 56.576 kb on - strand, within BWI76_RS00270 at 56.578 kb on + strand, within BWI76_RS00270 at 56.738 kb on + strand at 56.747 kb on - strand at 56.943 kb on + strand, within BWI76_RS00275
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X remove 53,362 + BWI76_RS00260 0.55 -0.1 53,417 - BWI76_RS00260 0.58 -0.4 53,417 - BWI76_RS00260 0.58 -0.2 53,441 + BWI76_RS00260 0.60 +1.6 53,457 - BWI76_RS00260 0.61 -0.3 53,671 - BWI76_RS00260 0.75 +0.5 53,687 + BWI76_RS00260 0.76 -0.3 53,855 - BWI76_RS00260 0.88 -0.1 53,951 - -0.7 53,951 - -0.7 53,951 - -0.3 53,993 + -0.5 54,028 + +0.3 54,089 - -0.1 54,093 + -0.2 54,142 + -0.1 54,142 + +0.0 54,142 + +0.9 54,142 + +0.7 54,150 - +0.0 54,163 + +0.6 54,184 + -1.4 54,342 + -1.0 54,344 + -1.7 54,351 - -0.8 54,351 - -0.8 54,392 + -1.1 54,506 - BWI76_RS00265 0.13 -1.2 54,568 + BWI76_RS00265 0.17 -2.2 54,568 + BWI76_RS00265 0.17 -0.7 54,576 - +1.9 54,618 + BWI76_RS00265 0.19 -0.5 54,687 - BWI76_RS00265 0.23 -1.4 54,803 + BWI76_RS00265 0.29 -0.6 54,838 - BWI76_RS00265 0.31 +0.3 54,854 - BWI76_RS00265 0.32 -1.6 54,924 - BWI76_RS00265 0.36 +1.3 55,033 + BWI76_RS00265 0.41 -0.7 55,033 + BWI76_RS00265 0.41 -1.6 55,041 - BWI76_RS00265 0.42 -0.2 55,041 - BWI76_RS00265 0.42 -1.6 55,046 - BWI76_RS00265 0.42 -4.0 55,156 - BWI76_RS00265 0.48 -1.3 55,172 - BWI76_RS00265 0.49 +0.3 55,192 - BWI76_RS00265 0.50 -0.1 55,260 + BWI76_RS00265 0.54 -0.9 55,336 + BWI76_RS00265 0.58 -2.1 55,336 + BWI76_RS00265 0.58 -0.3 55,336 + -0.1 55,336 + BWI76_RS00265 0.58 -0.8 55,344 - BWI76_RS00265 0.58 -1.1 55,358 + BWI76_RS00265 0.59 +1.0 55,360 + BWI76_RS00265 0.59 -1.1 55,368 - BWI76_RS00265 0.59 -2.4 55,368 - BWI76_RS00265 0.59 -1.2 55,580 - BWI76_RS00265 0.71 -2.1 55,697 - BWI76_RS00265 0.77 -0.9 55,728 + BWI76_RS00265 0.79 -1.9 55,745 + BWI76_RS00265 0.80 -1.9 55,810 + BWI76_RS00265 0.83 -0.1 55,932 + BWI76_RS00265 0.90 -2.6 55,932 + BWI76_RS00265 0.90 -0.2 55,940 - -0.1 56,062 + -0.8 56,370 - BWI76_RS00270 0.15 +0.1 56,429 + BWI76_RS00270 0.29 +0.1 56,435 + BWI76_RS00270 0.30 +0.0 56,540 - BWI76_RS00270 0.55 +0.3 56,568 + BWI76_RS00270 0.62 -0.4 56,576 - BWI76_RS00270 0.64 +0.1 56,576 - BWI76_RS00270 0.64 +1.3 56,576 - BWI76_RS00270 0.64 +0.9 56,578 + BWI76_RS00270 0.64 -0.5 56,738 + +0.3 56,747 - +2.2 56,943 + BWI76_RS00275 0.14 -1.6
Or see this region's nucleotide sequence