Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS25505

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS25500 and BWI76_RS25505 are separated by 305 nucleotidesBWI76_RS25505 and BWI76_RS25510 are separated by 219 nucleotides BWI76_RS25500: BWI76_RS25500 - rod shape-determining protein, at 5,300,504 to 5,301,547 _RS25500 BWI76_RS25505: BWI76_RS25505 - RNase E specificity factor CsrD, at 5,301,853 to 5,303,793 _RS25505 BWI76_RS25510: BWI76_RS25510 - oxidoreductase, at 5,304,013 to 5,304,987 _RS25510 Position (kb) 5301 5302 5303 5304Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 5301.849 kb on - strandat 5302.026 kb on - strandat 5302.031 kb on - strandat 5302.148 kb on - strand, within BWI76_RS25505at 5302.267 kb on + strand, within BWI76_RS25505at 5302.590 kb on + strand, within BWI76_RS25505at 5302.634 kb on - strand, within BWI76_RS25505at 5302.810 kb on - strand, within BWI76_RS25505at 5302.946 kb on + strand, within BWI76_RS25505at 5302.946 kb on + strand, within BWI76_RS25505at 5303.224 kb on + strand, within BWI76_RS25505at 5303.232 kb on - strand, within BWI76_RS25505at 5303.386 kb on + strand, within BWI76_RS25505at 5303.423 kb on + strand, within BWI76_RS25505at 5303.530 kb on + strand, within BWI76_RS25505at 5303.538 kb on - strand, within BWI76_RS25505at 5303.538 kb on - strandat 5303.624 kb on - strandat 5303.899 kb on + strandat 5303.969 kb on - strandat 5303.996 kb on + strandat 5304.112 kb on + strand, within BWI76_RS25510at 5304.139 kb on - strand, within BWI76_RS25510at 5304.248 kb on - strand, within BWI76_RS25510at 5304.364 kb on - strand, within BWI76_RS25510at 5304.468 kb on - strand, within BWI76_RS25510at 5304.756 kb on + strand, within BWI76_RS25510

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
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5,301,849 - -0.1
5,302,026 - -0.9
5,302,031 - -2.1
5,302,148 - BWI76_RS25505 0.15 -3.9
5,302,267 + BWI76_RS25505 0.21 -2.2
5,302,590 + BWI76_RS25505 0.38 -2.7
5,302,634 - BWI76_RS25505 0.40 -1.5
5,302,810 - BWI76_RS25505 0.49 -0.9
5,302,946 + BWI76_RS25505 0.56 -0.6
5,302,946 + BWI76_RS25505 0.56 -1.4
5,303,224 + BWI76_RS25505 0.71 -0.6
5,303,232 - BWI76_RS25505 0.71 -1.9
5,303,386 + BWI76_RS25505 0.79 -0.8
5,303,423 + BWI76_RS25505 0.81 -1.3
5,303,530 + BWI76_RS25505 0.86 -0.7
5,303,538 - BWI76_RS25505 0.87 -2.6
5,303,538 - +0.9
5,303,624 - -2.8
5,303,899 + -0.7
5,303,969 - +0.5
5,303,996 + -0.4
5,304,112 + BWI76_RS25510 0.10 -0.6
5,304,139 - BWI76_RS25510 0.13 +1.2
5,304,248 - BWI76_RS25510 0.24 +0.7
5,304,364 - BWI76_RS25510 0.36 +0.3
5,304,468 - BWI76_RS25510 0.47 -0.2
5,304,756 + BWI76_RS25510 0.76 +0.2

Or see this region's nucleotide sequence