Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS24325 and BWI76_RS24330 are separated by 152 nucleotides BWI76_RS24330 and BWI76_RS24335 are separated by 151 nucleotides BWI76_RS24335 and BWI76_RS24340 overlap by 4 nucleotides
BWI76_RS24325: BWI76_RS24325 - DNA topoisomerase IV subunit A, at 5,069,377 to 5,071,635
_RS24325
BWI76_RS24330: BWI76_RS24330 - TIGR00156 family protein, at 5,071,788 to 5,072,195
_RS24330
BWI76_RS24335: BWI76_RS24335 - two-component system response regulator QseB, at 5,072,347 to 5,073,006
_RS24335
BWI76_RS24340: BWI76_RS24340 - two-component sensor histidine kinase, at 5,073,003 to 5,074,352
_RS24340
Position (kb) 5071
5072
5073 Strain fitness (log2 ratio) -1
0
1 at 5071.723 kb on + strand at 5071.731 kb on - strand at 5071.731 kb on - strand at 5071.778 kb on + strand at 5071.875 kb on - strand, within BWI76_RS24330 at 5071.888 kb on - strand, within BWI76_RS24330 at 5071.918 kb on - strand, within BWI76_RS24330 at 5072.137 kb on - strand, within BWI76_RS24330 at 5072.214 kb on - strand at 5072.227 kb on + strand at 5072.227 kb on + strand at 5072.227 kb on + strand at 5072.235 kb on - strand at 5072.235 kb on - strand at 5072.235 kb on - strand at 5072.235 kb on - strand at 5072.440 kb on - strand, within BWI76_RS24335 at 5072.466 kb on + strand, within BWI76_RS24335 at 5072.474 kb on - strand, within BWI76_RS24335 at 5072.474 kb on - strand, within BWI76_RS24335 at 5072.725 kb on - strand, within BWI76_RS24335 at 5072.765 kb on + strand, within BWI76_RS24335 at 5072.907 kb on - strand, within BWI76_RS24335 at 5072.927 kb on + strand, within BWI76_RS24335 at 5072.927 kb on + strand, within BWI76_RS24335 at 5072.979 kb on - strand at 5072.989 kb on + strand at 5072.992 kb on - strand at 5072.992 kb on - strand at 5073.112 kb on + strand at 5073.112 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X remove 5,071,723 + -0.2 5,071,731 - -0.4 5,071,731 - +0.5 5,071,778 + +0.5 5,071,875 - BWI76_RS24330 0.21 -0.6 5,071,888 - BWI76_RS24330 0.25 -0.9 5,071,918 - BWI76_RS24330 0.32 -0.9 5,072,137 - BWI76_RS24330 0.86 -1.6 5,072,214 - -0.3 5,072,227 + -1.1 5,072,227 + +0.3 5,072,227 + -0.4 5,072,235 - +0.5 5,072,235 - -0.3 5,072,235 - +0.5 5,072,235 - -0.8 5,072,440 - BWI76_RS24335 0.14 +0.4 5,072,466 + BWI76_RS24335 0.18 -0.1 5,072,474 - BWI76_RS24335 0.19 +0.5 5,072,474 - BWI76_RS24335 0.19 -0.3 5,072,725 - BWI76_RS24335 0.57 -1.3 5,072,765 + BWI76_RS24335 0.63 -0.1 5,072,907 - BWI76_RS24335 0.85 -0.9 5,072,927 + BWI76_RS24335 0.88 +1.3 5,072,927 + BWI76_RS24335 0.88 -0.6 5,072,979 - -0.5 5,072,989 + +0.3 5,072,992 - +0.7 5,072,992 - +0.4 5,073,112 + -0.1 5,073,112 - -0.9
Or see this region's nucleotide sequence