Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS22290 and BWI76_RS22295 are separated by 26 nucleotides BWI76_RS22295 and BWI76_RS22300 are separated by 212 nucleotides BWI76_RS22300 and BWI76_RS22305 overlap by 8 nucleotides
BWI76_RS22290: BWI76_RS22290 - PTS cellobiose/arbutin/salicin transporter subunit IIBC, at 4,646,841 to 4,648,283
_RS22290
BWI76_RS22295: BWI76_RS22295 - 6-phospho-beta-glucosidase, at 4,648,310 to 4,649,734
_RS22295
BWI76_RS22300: BWI76_RS22300 - hydrogenase 3 maturation endopeptidase HyCI, at 4,649,947 to 4,650,432
_RS22300
BWI76_RS22305: BWI76_RS22305 - formate hydrogenlyase maturation protein HycH, at 4,650,425 to 4,650,835
_RS22305
Position (kb)
4648
4649
4650 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4647.443 kb on + strand, within BWI76_RS22290 at 4647.506 kb on - strand, within BWI76_RS22290 at 4647.515 kb on + strand, within BWI76_RS22290 at 4647.688 kb on + strand, within BWI76_RS22290 at 4647.691 kb on - strand, within BWI76_RS22290 at 4647.691 kb on - strand, within BWI76_RS22290 at 4647.691 kb on - strand, within BWI76_RS22290 at 4648.094 kb on + strand, within BWI76_RS22290 at 4648.139 kb on + strand at 4648.212 kb on - strand at 4648.212 kb on - strand at 4648.301 kb on + strand at 4648.586 kb on - strand, within BWI76_RS22295 at 4648.819 kb on - strand, within BWI76_RS22295 at 4648.833 kb on + strand, within BWI76_RS22295 at 4649.018 kb on - strand, within BWI76_RS22295 at 4649.040 kb on - strand, within BWI76_RS22295 at 4649.119 kb on - strand, within BWI76_RS22295 at 4649.173 kb on - strand, within BWI76_RS22295 at 4649.251 kb on - strand, within BWI76_RS22295 at 4649.368 kb on + strand, within BWI76_RS22295 at 4649.552 kb on + strand, within BWI76_RS22295 at 4649.559 kb on - strand, within BWI76_RS22295 at 4649.614 kb on + strand at 4649.774 kb on - strand at 4649.995 kb on + strand at 4650.366 kb on - strand, within BWI76_RS22300 at 4650.494 kb on - strand, within BWI76_RS22305
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X remove 4,647,443 + BWI76_RS22290 0.42 -0.3 4,647,506 - BWI76_RS22290 0.46 -0.4 4,647,515 + BWI76_RS22290 0.47 -0.3 4,647,688 + BWI76_RS22290 0.59 +0.1 4,647,691 - BWI76_RS22290 0.59 +0.1 4,647,691 - BWI76_RS22290 0.59 +0.4 4,647,691 - BWI76_RS22290 0.59 +0.3 4,648,094 + BWI76_RS22290 0.87 +0.3 4,648,139 + +0.2 4,648,212 - +1.2 4,648,212 - +2.6 4,648,301 + -0.2 4,648,586 - BWI76_RS22295 0.19 -0.3 4,648,819 - BWI76_RS22295 0.36 -0.0 4,648,833 + BWI76_RS22295 0.37 +0.1 4,649,018 - BWI76_RS22295 0.50 -1.1 4,649,040 - BWI76_RS22295 0.51 -0.9 4,649,119 - BWI76_RS22295 0.57 -0.1 4,649,173 - BWI76_RS22295 0.61 -0.9 4,649,251 - BWI76_RS22295 0.66 -0.7 4,649,368 + BWI76_RS22295 0.74 -0.5 4,649,552 + BWI76_RS22295 0.87 -1.9 4,649,559 - BWI76_RS22295 0.88 -0.8 4,649,614 + +0.7 4,649,774 - +0.3 4,649,995 + +0.1 4,650,366 - BWI76_RS22300 0.86 -0.1 4,650,494 - BWI76_RS22305 0.17 +1.3
Or see this region's nucleotide sequence