Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS07695 and BWI76_RS07700 overlap by 8 nucleotides BWI76_RS07700 and BWI76_RS07705 are separated by 64 nucleotides BWI76_RS07705 and BWI76_RS07710 are separated by 27 nucleotides BWI76_RS07710 and BWI76_RS07715 are separated by 10 nucleotides
BWI76_RS07695: BWI76_RS07695 - TonB-dependent siderophore receptor, at 1,629,842 to 1,632,091
_RS07695
BWI76_RS07700: BWI76_RS07700 - hypothetical protein, at 1,632,084 to 1,632,297
_RS07700
BWI76_RS07705: BWI76_RS07705 - enterochelin esterase, at 1,632,362 to 1,633,561
_RS07705
BWI76_RS07710: BWI76_RS07710 - invasin-like protein, at 1,633,589 to 1,633,792
_RS07710
BWI76_RS07715: BWI76_RS07715 - non-ribosomal peptide synthetase, at 1,633,803 to 1,637,690
_RS07715
Position (kb) 1632
1633
1634 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1631.539 kb on + strand, within BWI76_RS07695 at 1631.758 kb on + strand, within BWI76_RS07695 at 1631.842 kb on + strand, within BWI76_RS07695 at 1631.850 kb on - strand, within BWI76_RS07695 at 1632.194 kb on + strand, within BWI76_RS07700 at 1632.372 kb on - strand at 1632.427 kb on - strand at 1632.635 kb on - strand, within BWI76_RS07705 at 1632.875 kb on - strand, within BWI76_RS07705 at 1632.971 kb on + strand, within BWI76_RS07705 at 1633.541 kb on + strand at 1633.763 kb on + strand, within BWI76_RS07710 at 1633.763 kb on + strand, within BWI76_RS07710 at 1633.763 kb on + strand, within BWI76_RS07710 at 1633.897 kb on + strand at 1633.905 kb on - strand at 1633.972 kb on + strand at 1633.980 kb on - strand at 1634.061 kb on - strand at 1634.158 kb on + strand at 1634.397 kb on + strand, within BWI76_RS07715 at 1634.410 kb on - strand, within BWI76_RS07715 at 1634.558 kb on - strand, within BWI76_RS07715
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X remove 1,631,539 + BWI76_RS07695 0.75 -0.3 1,631,758 + BWI76_RS07695 0.85 -0.6 1,631,842 + BWI76_RS07695 0.89 -0.6 1,631,850 - BWI76_RS07695 0.89 -0.3 1,632,194 + BWI76_RS07700 0.51 +2.9 1,632,372 - -0.6 1,632,427 - -0.2 1,632,635 - BWI76_RS07705 0.23 -0.7 1,632,875 - BWI76_RS07705 0.43 -1.8 1,632,971 + BWI76_RS07705 0.51 +0.8 1,633,541 + -0.6 1,633,763 + BWI76_RS07710 0.85 +0.1 1,633,763 + BWI76_RS07710 0.85 -0.7 1,633,763 + BWI76_RS07710 0.85 -1.1 1,633,897 + -0.5 1,633,905 - +0.3 1,633,972 + -0.0 1,633,980 - -0.2 1,634,061 - -0.1 1,634,158 + -0.4 1,634,397 + BWI76_RS07715 0.15 +0.2 1,634,410 - BWI76_RS07715 0.16 +0.0 1,634,558 - BWI76_RS07715 0.19 +0.2
Or see this region's nucleotide sequence