Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS02575 and BWI76_RS02580 are separated by 85 nucleotides BWI76_RS02580 and BWI76_RS02585 are separated by 45 nucleotides BWI76_RS02585 and BWI76_RS02590 are separated by 105 nucleotides
BWI76_RS02575: BWI76_RS02575 - exoribonuclease R, at 526,736 to 529,183
_RS02575
BWI76_RS02580: BWI76_RS02580 - 23S rRNA (guanosine(2251)-2'-O)-methyltransferase, at 529,269 to 530,000
_RS02580
BWI76_RS02585: BWI76_RS02585 - hypothetical protein, at 530,046 to 530,399
_RS02585
BWI76_RS02590: BWI76_RS02590 - isovaleryl-CoA dehydrogenase, at 530,505 to 532,142
_RS02590
Position (kb) 529
530
531 Strain fitness (log2 ratio) -2
-1
0
1 at 528.459 kb on + strand, within BWI76_RS02575 at 528.757 kb on - strand, within BWI76_RS02575 at 528.884 kb on - strand, within BWI76_RS02575 at 529.089 kb on - strand at 529.149 kb on - strand at 529.667 kb on + strand, within BWI76_RS02580 at 529.792 kb on + strand, within BWI76_RS02580 at 529.804 kb on + strand, within BWI76_RS02580 at 529.971 kb on - strand at 530.042 kb on - strand at 530.042 kb on - strand at 530.114 kb on - strand, within BWI76_RS02585 at 530.114 kb on - strand, within BWI76_RS02585 at 530.253 kb on + strand, within BWI76_RS02585 at 530.286 kb on - strand, within BWI76_RS02585 at 530.351 kb on + strand, within BWI76_RS02585 at 530.353 kb on + strand, within BWI76_RS02585 at 530.526 kb on - strand at 530.552 kb on - strand at 530.827 kb on + strand, within BWI76_RS02590 at 530.931 kb on - strand, within BWI76_RS02590
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X remove 528,459 + BWI76_RS02575 0.70 -0.5 528,757 - BWI76_RS02575 0.83 -1.7 528,884 - BWI76_RS02575 0.88 +0.4 529,089 - +0.3 529,149 - -0.6 529,667 + BWI76_RS02580 0.54 +0.2 529,792 + BWI76_RS02580 0.71 -2.0 529,804 + BWI76_RS02580 0.73 -1.8 529,971 - +0.3 530,042 - -0.1 530,042 - -0.0 530,114 - BWI76_RS02585 0.19 -0.2 530,114 - BWI76_RS02585 0.19 -0.1 530,253 + BWI76_RS02585 0.58 +0.2 530,286 - BWI76_RS02585 0.68 -0.6 530,351 + BWI76_RS02585 0.86 +0.0 530,353 + BWI76_RS02585 0.87 -0.4 530,526 - -0.3 530,552 - -0.1 530,827 + BWI76_RS02590 0.20 -0.5 530,931 - BWI76_RS02590 0.26 -1.0
Or see this region's nucleotide sequence