Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26905 and BWI76_RS26910 overlap by 21 nucleotides BWI76_RS26910 and BWI76_RS26915 are separated by 107 nucleotides BWI76_RS26915 and BWI76_RS26920 are separated by 159 nucleotides
BWI76_RS26905: BWI76_RS26905 - oxalate/formate antiport family MFS transporter, at 5,582,028 to 5,583,230
_RS26905
BWI76_RS26910: BWI76_RS26910 - hypothetical protein, at 5,583,210 to 5,583,428
_RS26910
BWI76_RS26915: BWI76_RS26915 - hypothetical protein, at 5,583,536 to 5,584,180
_RS26915
BWI76_RS26920: BWI76_RS26920 - DNA-3-methyladenine glycosylase I, at 5,584,340 to 5,584,921
_RS26920
Position (kb)
5583
5584 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 5582.498 kb on - strand, within BWI76_RS26905 at 5582.502 kb on + strand, within BWI76_RS26905 at 5582.542 kb on - strand, within BWI76_RS26905 at 5582.590 kb on + strand, within BWI76_RS26905 at 5582.591 kb on - strand, within BWI76_RS26905 at 5582.857 kb on + strand, within BWI76_RS26905 at 5582.957 kb on + strand, within BWI76_RS26905 at 5582.963 kb on + strand, within BWI76_RS26905 at 5582.998 kb on - strand, within BWI76_RS26905 at 5583.040 kb on + strand, within BWI76_RS26905 at 5583.040 kb on + strand, within BWI76_RS26905 at 5583.050 kb on + strand at 5583.189 kb on - strand at 5583.191 kb on + strand at 5583.191 kb on + strand at 5583.191 kb on + strand at 5583.191 kb on + strand at 5583.191 kb on + strand at 5583.191 kb on + strand at 5583.191 kb on + strand at 5583.191 kb on + strand at 5583.199 kb on - strand at 5583.199 kb on - strand at 5583.199 kb on - strand at 5583.199 kb on - strand at 5583.199 kb on - strand at 5583.199 kb on - strand at 5583.225 kb on + strand at 5583.277 kb on + strand, within BWI76_RS26910 at 5583.285 kb on - strand, within BWI76_RS26910 at 5583.285 kb on - strand, within BWI76_RS26910 at 5583.307 kb on + strand, within BWI76_RS26910 at 5583.315 kb on - strand, within BWI76_RS26910 at 5583.513 kb on - strand at 5583.513 kb on - strand at 5583.513 kb on - strand at 5583.513 kb on - strand at 5583.597 kb on + strand at 5583.597 kb on - strand at 5583.605 kb on - strand, within BWI76_RS26915 at 5583.607 kb on + strand, within BWI76_RS26915 at 5583.625 kb on + strand, within BWI76_RS26915 at 5583.667 kb on + strand, within BWI76_RS26915 at 5583.745 kb on + strand, within BWI76_RS26915 at 5583.745 kb on + strand, within BWI76_RS26915 at 5583.865 kb on + strand, within BWI76_RS26915 at 5584.018 kb on + strand, within BWI76_RS26915 at 5584.028 kb on + strand, within BWI76_RS26915 at 5584.031 kb on - strand, within BWI76_RS26915 at 5584.036 kb on - strand, within BWI76_RS26915 at 5584.038 kb on - strand, within BWI76_RS26915 at 5584.043 kb on - strand, within BWI76_RS26915 at 5584.050 kb on + strand, within BWI76_RS26915 at 5584.050 kb on + strand, within BWI76_RS26915 at 5584.082 kb on - strand, within BWI76_RS26915 at 5584.084 kb on + strand, within BWI76_RS26915 at 5584.116 kb on + strand at 5584.149 kb on + strand at 5584.208 kb on - strand at 5584.258 kb on + strand at 5584.329 kb on + strand at 5584.378 kb on - strand at 5584.378 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X remove 5,582,498 - BWI76_RS26905 0.39 +0.6 5,582,502 + BWI76_RS26905 0.39 -0.2 5,582,542 - BWI76_RS26905 0.43 -0.4 5,582,590 + BWI76_RS26905 0.47 -0.0 5,582,591 - BWI76_RS26905 0.47 -1.4 5,582,857 + BWI76_RS26905 0.69 +0.2 5,582,957 + BWI76_RS26905 0.77 -1.2 5,582,963 + BWI76_RS26905 0.78 -2.6 5,582,998 - BWI76_RS26905 0.81 +0.8 5,583,040 + BWI76_RS26905 0.84 +1.4 5,583,040 + BWI76_RS26905 0.84 -0.5 5,583,050 + -0.9 5,583,189 - -0.3 5,583,191 + +0.0 5,583,191 + +0.1 5,583,191 + +2.9 5,583,191 + -0.2 5,583,191 + -0.1 5,583,191 + -0.1 5,583,191 + -0.1 5,583,191 + +0.7 5,583,199 - +0.3 5,583,199 - +1.7 5,583,199 - +0.5 5,583,199 - -1.2 5,583,199 - -1.8 5,583,199 - -3.3 5,583,225 + -1.1 5,583,277 + BWI76_RS26910 0.31 +2.1 5,583,285 - BWI76_RS26910 0.34 +0.1 5,583,285 - BWI76_RS26910 0.34 +1.1 5,583,307 + BWI76_RS26910 0.44 +0.4 5,583,315 - BWI76_RS26910 0.48 -0.1 5,583,513 - +1.1 5,583,513 - -1.8 5,583,513 - -0.6 5,583,513 - +1.2 5,583,597 + +0.7 5,583,597 - -0.3 5,583,605 - BWI76_RS26915 0.11 -0.3 5,583,607 + BWI76_RS26915 0.11 +0.7 5,583,625 + BWI76_RS26915 0.14 -0.5 5,583,667 + BWI76_RS26915 0.20 +0.5 5,583,745 + BWI76_RS26915 0.32 -0.6 5,583,745 + BWI76_RS26915 0.32 -0.9 5,583,865 + BWI76_RS26915 0.51 -0.4 5,584,018 + BWI76_RS26915 0.75 +1.3 5,584,028 + BWI76_RS26915 0.76 +0.3 5,584,031 - BWI76_RS26915 0.77 -1.6 5,584,036 - BWI76_RS26915 0.78 +0.3 5,584,038 - BWI76_RS26915 0.78 +0.1 5,584,043 - BWI76_RS26915 0.79 +0.2 5,584,050 + BWI76_RS26915 0.80 -0.9 5,584,050 + BWI76_RS26915 0.80 -0.2 5,584,082 - BWI76_RS26915 0.85 -0.2 5,584,084 + BWI76_RS26915 0.85 +0.7 5,584,116 + +0.2 5,584,149 + -0.2 5,584,208 - +1.3 5,584,258 + -0.1 5,584,329 + +0.2 5,584,378 - -0.2 5,584,378 - +0.1
Or see this region's nucleotide sequence