Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS19775

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS19770 and BWI76_RS19775 are separated by 190 nucleotidesBWI76_RS19775 and BWI76_RS19780 are separated by 70 nucleotides BWI76_RS19770: BWI76_RS19770 - bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase, at 4,133,295 to 4,133,864 _RS19770 BWI76_RS19775: BWI76_RS19775 - phage resistance protein, at 4,134,055 to 4,135,617 _RS19775 BWI76_RS19780: BWI76_RS19780 - antibiotic ABC transporter substrate-binding protein, at 4,135,688 to 4,137,493 _RS19780 Position (kb) 4134 4135 4136Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4133.124 kb on - strandat 4133.124 kb on - strandat 4133.124 kb on - strandat 4133.281 kb on + strandat 4133.289 kb on - strandat 4133.289 kb on - strandat 4133.358 kb on + strand, within BWI76_RS19770at 4133.366 kb on - strand, within BWI76_RS19770at 4133.847 kb on + strandat 4134.051 kb on + strandat 4134.059 kb on - strandat 4134.202 kb on + strandat 4134.202 kb on + strandat 4134.202 kb on + strandat 4134.911 kb on + strand, within BWI76_RS19775at 4134.919 kb on - strand, within BWI76_RS19775at 4135.463 kb on - strandat 4135.637 kb on + strandat 4135.704 kb on + strandat 4135.757 kb on - strandat 4135.811 kb on - strandat 4135.811 kb on - strandat 4135.859 kb on - strandat 4135.932 kb on + strand, within BWI76_RS19780at 4135.954 kb on - strand, within BWI76_RS19780at 4136.348 kb on + strand, within BWI76_RS19780at 4136.474 kb on + strand, within BWI76_RS19780

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
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4,133,124 - -0.8
4,133,124 - -2.3
4,133,124 - -1.8
4,133,281 + -2.3
4,133,289 - -4.0
4,133,289 - -0.9
4,133,358 + BWI76_RS19770 0.11 -1.3
4,133,366 - BWI76_RS19770 0.12 +0.3
4,133,847 + -4.0
4,134,051 + -2.5
4,134,059 - -1.3
4,134,202 + -0.1
4,134,202 + -0.4
4,134,202 + +0.4
4,134,911 + BWI76_RS19775 0.55 -1.6
4,134,919 - BWI76_RS19775 0.55 -1.6
4,135,463 - -0.2
4,135,637 + -0.3
4,135,704 + -0.8
4,135,757 - -0.3
4,135,811 - -0.2
4,135,811 - +0.4
4,135,859 - -1.3
4,135,932 + BWI76_RS19780 0.14 +0.2
4,135,954 - BWI76_RS19780 0.15 -0.6
4,136,348 + BWI76_RS19780 0.37 -0.3
4,136,474 + BWI76_RS19780 0.44 -1.0

Or see this region's nucleotide sequence