Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS11220

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS11210 and BWI76_RS11215 overlap by 8 nucleotidesBWI76_RS11215 and BWI76_RS11220 overlap by 1 nucleotidesBWI76_RS11220 and BWI76_RS11225 are separated by 48 nucleotidesBWI76_RS11225 and BWI76_RS11230 are separated by 14 nucleotides BWI76_RS11210: BWI76_RS11210 - outer membrane-specific lipoprotein transporter subunit LolC, at 2,365,560 to 2,366,768 _RS11210 BWI76_RS11215: BWI76_RS11215 - lipoprotein ABC transporter ATP-binding protein LolD, at 2,366,761 to 2,367,462 _RS11215 BWI76_RS11220: BWI76_RS11220 - lipoprotein transporter subunit LolE, at 2,367,462 to 2,368,706 _RS11220 BWI76_RS11225: BWI76_RS11225 - N-acetylglucosamine kinase, at 2,368,755 to 2,369,666 _RS11225 BWI76_RS11230: BWI76_RS11230 - NAD-dependent deacylase, at 2,369,681 to 2,370,526 _RS11230 Position (kb) 2367 2368 2369Strain fitness (log2 ratio) -1 0 1at 2368.804 kb on - strandat 2369.610 kb on + strandat 2369.628 kb on + strandat 2369.636 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
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2,368,804 - -0.5
2,369,610 + -1.6
2,369,628 + -0.2
2,369,636 - +0.8

Or see this region's nucleotide sequence