Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS11165

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS11155 and BWI76_RS11160 overlap by 20 nucleotidesBWI76_RS11160 and BWI76_RS11165 are separated by 19 nucleotidesBWI76_RS11165 and BWI76_RS11170 are separated by 36 nucleotidesBWI76_RS11170 and BWI76_RS11175 are separated by 233 nucleotides BWI76_RS11155: BWI76_RS11155 - penicillin-binding protein activator LpoB, at 2,351,383 to 2,352,018 _RS11155 BWI76_RS11160: BWI76_RS11160 - thiamine kinase, at 2,351,999 to 2,352,817 _RS11160 BWI76_RS11165: BWI76_RS11165 - beta-N-acetylhexosaminidase, at 2,352,837 to 2,353,859 _RS11165 BWI76_RS11170: BWI76_RS11170 - hypothetical protein, at 2,353,896 to 2,354,438 _RS11170 BWI76_RS11175: BWI76_RS11175 - NADH dehydrogenase, at 2,354,672 to 2,355,976 _RS11175 Position (kb) 2352 2353 2354Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2351.881 kb on - strand, within BWI76_RS11155at 2352.007 kb on - strandat 2352.066 kb on - strandat 2352.951 kb on - strandat 2353.075 kb on - strand, within BWI76_RS11165at 2353.102 kb on + strand, within BWI76_RS11165at 2353.102 kb on + strand, within BWI76_RS11165at 2353.110 kb on - strand, within BWI76_RS11165at 2353.206 kb on + strand, within BWI76_RS11165at 2353.214 kb on - strand, within BWI76_RS11165at 2353.799 kb on - strandat 2353.821 kb on - strandat 2354.214 kb on - strand, within BWI76_RS11170at 2354.721 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
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2,351,881 - BWI76_RS11155 0.78 -3.2
2,352,007 - +0.3
2,352,066 - +0.0
2,352,951 - +2.6
2,353,075 - BWI76_RS11165 0.23 -0.7
2,353,102 + BWI76_RS11165 0.26 +0.8
2,353,102 + BWI76_RS11165 0.26 +0.3
2,353,110 - BWI76_RS11165 0.27 -0.2
2,353,206 + BWI76_RS11165 0.36 -0.0
2,353,214 - BWI76_RS11165 0.37 +0.3
2,353,799 - -0.6
2,353,821 - -2.7
2,354,214 - BWI76_RS11170 0.59 +0.1
2,354,721 + -1.3

Or see this region's nucleotide sequence