Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03590 and BWI76_RS03595 are separated by 53 nucleotides BWI76_RS03595 and BWI76_RS03600 are separated by 15 nucleotides BWI76_RS03600 and BWI76_RS03605 are separated by 17 nucleotides BWI76_RS03605 and BWI76_RS03610 are separated by 406 nucleotides
BWI76_RS03590: BWI76_RS03590 - acetaldehyde dehydrogenase (acetylating), at 744,308 to 745,909
_RS03590
BWI76_RS03595: BWI76_RS03595 - ethanolamine utilization protein EutM, at 745,963 to 746,241
_RS03595
BWI76_RS03600: BWI76_RS03600 - BMC domain-containing protein, at 746,257 to 746,541
_RS03600
BWI76_RS03605: BWI76_RS03605 - BMC domain-containing protein, at 746,559 to 746,837
_RS03605
BWI76_RS03610: BWI76_RS03610 - hypothetical protein, at 747,244 to 747,762
_RS03610
Position (kb) 746
747 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 745.306 kb on - strand, within BWI76_RS03590 at 745.306 kb on - strand, within BWI76_RS03590 at 745.354 kb on + strand, within BWI76_RS03590 at 745.362 kb on - strand, within BWI76_RS03590 at 745.450 kb on + strand, within BWI76_RS03590 at 745.869 kb on - strand at 745.883 kb on + strand at 746.034 kb on - strand, within BWI76_RS03595 at 746.173 kb on - strand, within BWI76_RS03595 at 746.505 kb on - strand, within BWI76_RS03600 at 746.523 kb on + strand at 746.557 kb on - strand at 746.557 kb on - strand at 746.695 kb on + strand, within BWI76_RS03605 at 746.725 kb on - strand, within BWI76_RS03605 at 746.769 kb on - strand, within BWI76_RS03605 at 746.819 kb on + strand at 746.819 kb on + strand at 746.827 kb on - strand at 746.827 kb on - strand at 747.301 kb on + strand, within BWI76_RS03610 at 747.338 kb on + strand, within BWI76_RS03610
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X remove 745,306 - BWI76_RS03590 0.62 -0.3 745,306 - BWI76_RS03590 0.62 -2.0 745,354 + BWI76_RS03590 0.65 -2.8 745,362 - BWI76_RS03590 0.66 -0.1 745,450 + BWI76_RS03590 0.71 -0.7 745,869 - +0.0 745,883 + +0.4 746,034 - BWI76_RS03595 0.25 -2.6 746,173 - BWI76_RS03595 0.75 -1.6 746,505 - BWI76_RS03600 0.87 -1.4 746,523 + -0.5 746,557 - -0.7 746,557 - -2.4 746,695 + BWI76_RS03605 0.49 +1.4 746,725 - BWI76_RS03605 0.59 +0.2 746,769 - BWI76_RS03605 0.75 +0.4 746,819 + +0.8 746,819 + -0.8 746,827 - -0.8 746,827 - +0.2 747,301 + BWI76_RS03610 0.11 +0.0 747,338 + BWI76_RS03610 0.18 -1.1
Or see this region's nucleotide sequence