Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01990 and BWI76_RS01995 overlap by 16 nucleotides BWI76_RS01995 and BWI76_RS02000 are separated by 84 nucleotides BWI76_RS02000 and BWI76_RS02005 are separated by 258 nucleotides
BWI76_RS01990: BWI76_RS01990 - cyclic diguanylate phosphodiesterase, at 409,135 to 410,739
_RS01990
BWI76_RS01995: BWI76_RS01995 - AraC family transcriptional regulator, at 410,724 to 411,053
_RS01995
BWI76_RS02000: BWI76_RS02000 - transcriptional regulator, at 411,138 to 411,596
_RS02000
BWI76_RS02005: BWI76_RS02005 - glutathione S-transferase, at 411,855 to 412,523
_RS02005
Position (kb) 410
411
412 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 409.725 kb on - strand, within BWI76_RS01990 at 409.726 kb on + strand, within BWI76_RS01990 at 409.734 kb on - strand, within BWI76_RS01990 at 409.824 kb on - strand, within BWI76_RS01990 at 409.864 kb on + strand, within BWI76_RS01990 at 409.864 kb on + strand, within BWI76_RS01990 at 409.864 kb on + strand, within BWI76_RS01990 at 409.865 kb on + strand, within BWI76_RS01990 at 409.872 kb on - strand, within BWI76_RS01990 at 409.887 kb on + strand, within BWI76_RS01990 at 409.887 kb on + strand, within BWI76_RS01990 at 409.933 kb on + strand, within BWI76_RS01990 at 409.945 kb on + strand, within BWI76_RS01990 at 409.974 kb on - strand, within BWI76_RS01990 at 409.997 kb on + strand, within BWI76_RS01990 at 410.141 kb on - strand, within BWI76_RS01990 at 410.142 kb on - strand, within BWI76_RS01990 at 410.279 kb on - strand, within BWI76_RS01990 at 410.291 kb on + strand, within BWI76_RS01990 at 410.413 kb on + strand, within BWI76_RS01990 at 410.422 kb on + strand, within BWI76_RS01990 at 410.430 kb on - strand, within BWI76_RS01990 at 410.625 kb on - strand at 410.915 kb on - strand, within BWI76_RS01995 at 411.091 kb on - strand at 411.314 kb on + strand, within BWI76_RS02000 at 411.385 kb on + strand, within BWI76_RS02000 at 411.393 kb on - strand, within BWI76_RS02000 at 411.393 kb on - strand, within BWI76_RS02000 at 411.454 kb on + strand, within BWI76_RS02000 at 411.454 kb on + strand, within BWI76_RS02000 at 411.454 kb on + strand, within BWI76_RS02000 at 411.454 kb on + strand, within BWI76_RS02000 at 411.454 kb on + strand, within BWI76_RS02000 at 411.462 kb on - strand, within BWI76_RS02000 at 411.462 kb on - strand, within BWI76_RS02000 at 411.462 kb on - strand, within BWI76_RS02000 at 411.462 kb on - strand, within BWI76_RS02000 at 411.699 kb on + strand at 411.699 kb on + strand at 411.699 kb on + strand at 411.699 kb on + strand at 411.702 kb on - strand at 411.707 kb on - strand at 411.707 kb on - strand at 411.707 kb on - strand at 411.707 kb on - strand at 411.727 kb on + strand at 411.864 kb on - strand at 411.943 kb on - strand, within BWI76_RS02005 at 411.951 kb on - strand, within BWI76_RS02005 at 411.953 kb on + strand, within BWI76_RS02005 at 411.959 kb on + strand, within BWI76_RS02005
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X remove 409,725 - BWI76_RS01990 0.37 -1.0 409,726 + BWI76_RS01990 0.37 +0.7 409,734 - BWI76_RS01990 0.37 -1.5 409,824 - BWI76_RS01990 0.43 -2.6 409,864 + BWI76_RS01990 0.45 -0.8 409,864 + BWI76_RS01990 0.45 -1.5 409,864 + BWI76_RS01990 0.45 +0.9 409,865 + BWI76_RS01990 0.45 -2.0 409,872 - BWI76_RS01990 0.46 -0.5 409,887 + BWI76_RS01990 0.47 +0.5 409,887 + BWI76_RS01990 0.47 -0.4 409,933 + BWI76_RS01990 0.50 -1.2 409,945 + BWI76_RS01990 0.50 -1.3 409,974 - BWI76_RS01990 0.52 -0.3 409,997 + BWI76_RS01990 0.54 -1.7 410,141 - BWI76_RS01990 0.63 -0.6 410,142 - BWI76_RS01990 0.63 +0.6 410,279 - BWI76_RS01990 0.71 -0.4 410,291 + BWI76_RS01990 0.72 -0.8 410,413 + BWI76_RS01990 0.80 -0.7 410,422 + BWI76_RS01990 0.80 -0.5 410,430 - BWI76_RS01990 0.81 -0.9 410,625 - -3.7 410,915 - BWI76_RS01995 0.58 -0.7 411,091 - +0.8 411,314 + BWI76_RS02000 0.38 +1.4 411,385 + BWI76_RS02000 0.54 +0.7 411,393 - BWI76_RS02000 0.56 +0.3 411,393 - BWI76_RS02000 0.56 -0.6 411,454 + BWI76_RS02000 0.69 +1.1 411,454 + BWI76_RS02000 0.69 +0.9 411,454 + BWI76_RS02000 0.69 +0.6 411,454 + BWI76_RS02000 0.69 +0.2 411,454 + BWI76_RS02000 0.69 -0.2 411,462 - BWI76_RS02000 0.71 -0.1 411,462 - BWI76_RS02000 0.71 -0.9 411,462 - BWI76_RS02000 0.71 +1.1 411,462 - BWI76_RS02000 0.71 -1.7 411,699 + +0.1 411,699 + -0.9 411,699 + -0.1 411,699 + +1.5 411,702 - +1.1 411,707 - +0.1 411,707 - -0.7 411,707 - -0.3 411,707 - -0.6 411,727 + -2.5 411,864 - -2.5 411,943 - BWI76_RS02005 0.13 -0.4 411,951 - BWI76_RS02005 0.14 -0.2 411,953 + BWI76_RS02005 0.15 -0.7 411,959 + BWI76_RS02005 0.16 -0.5
Or see this region's nucleotide sequence