Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS24905

Experiment: P. phyto corn MOI 0.1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS24900 and BPHYT_RS24905 are separated by 304 nucleotidesBPHYT_RS24905 and BPHYT_RS24910 are separated by 126 nucleotides BPHYT_RS24900: BPHYT_RS24900 - ABC transporter ATP-binding protein, at 1,158,484 to 1,159,215 _RS24900 BPHYT_RS24905: BPHYT_RS24905 - hypothetical protein, at 1,159,520 to 1,159,786 _RS24905 BPHYT_RS24910: BPHYT_RS24910 - NADH:ubiquinone oxidoreductase subunit M, at 1,159,913 to 1,161,469 _RS24910 Position (kb) 1159 1160Strain fitness (log2 ratio) -2 -1 0 1 2at 1159.157 kb on + strandat 1159.210 kb on + strandat 1159.210 kb on + strandat 1159.210 kb on + strandat 1159.210 kb on + strandat 1159.210 kb on + strandat 1159.322 kb on + strandat 1159.323 kb on - strandat 1159.323 kb on - strandat 1159.432 kb on + strandat 1159.437 kb on - strandat 1159.697 kb on + strand, within BPHYT_RS24905at 1159.698 kb on - strand, within BPHYT_RS24905at 1159.698 kb on - strand, within BPHYT_RS24905at 1159.739 kb on - strand, within BPHYT_RS24905at 1159.739 kb on - strand, within BPHYT_RS24905at 1159.739 kb on - strand, within BPHYT_RS24905at 1159.739 kb on - strand, within BPHYT_RS24905at 1159.744 kb on + strand, within BPHYT_RS24905at 1159.745 kb on - strand, within BPHYT_RS24905at 1159.752 kb on + strand, within BPHYT_RS24905at 1159.753 kb on - strand, within BPHYT_RS24905at 1159.837 kb on + strandat 1159.838 kb on - strandat 1159.838 kb on - strandat 1159.890 kb on - strandat 1159.905 kb on + strandat 1159.931 kb on - strandat 1159.931 kb on - strandat 1159.938 kb on + strandat 1159.938 kb on + strandat 1159.939 kb on - strandat 1159.939 kb on - strandat 1159.939 kb on - strandat 1159.951 kb on + strandat 1159.952 kb on - strandat 1160.132 kb on + strand, within BPHYT_RS24910at 1160.358 kb on - strand, within BPHYT_RS24910at 1160.358 kb on - strand, within BPHYT_RS24910at 1160.396 kb on + strand, within BPHYT_RS24910at 1160.462 kb on + strand, within BPHYT_RS24910at 1160.463 kb on - strand, within BPHYT_RS24910at 1160.463 kb on - strand, within BPHYT_RS24910at 1160.466 kb on + strand, within BPHYT_RS24910at 1160.466 kb on + strand, within BPHYT_RS24910at 1160.469 kb on - strand, within BPHYT_RS24910at 1160.672 kb on + strand, within BPHYT_RS24910at 1160.765 kb on + strand, within BPHYT_RS24910at 1160.766 kb on - strand, within BPHYT_RS24910

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction P. phyto corn MOI 0.1
remove
1,159,157 + -1.3
1,159,210 + +0.4
1,159,210 + -0.8
1,159,210 + -0.1
1,159,210 + +0.3
1,159,210 + +0.3
1,159,322 + -0.0
1,159,323 - -0.8
1,159,323 - +0.3
1,159,432 + +0.1
1,159,437 - -0.2
1,159,697 + BPHYT_RS24905 0.66 +0.9
1,159,698 - BPHYT_RS24905 0.67 +0.2
1,159,698 - BPHYT_RS24905 0.67 +0.8
1,159,739 - BPHYT_RS24905 0.82 +0.7
1,159,739 - BPHYT_RS24905 0.82 +0.3
1,159,739 - BPHYT_RS24905 0.82 +0.1
1,159,739 - BPHYT_RS24905 0.82 +0.2
1,159,744 + BPHYT_RS24905 0.84 +1.0
1,159,745 - BPHYT_RS24905 0.84 +1.9
1,159,752 + BPHYT_RS24905 0.87 -1.8
1,159,753 - BPHYT_RS24905 0.87 -0.3
1,159,837 + -0.7
1,159,838 - +1.2
1,159,838 - -0.2
1,159,890 - +0.2
1,159,905 + +0.2
1,159,931 - -0.5
1,159,931 - +0.6
1,159,938 + -0.4
1,159,938 + +0.5
1,159,939 - -0.6
1,159,939 - +0.1
1,159,939 - +0.2
1,159,951 + -1.0
1,159,952 - +0.0
1,160,132 + BPHYT_RS24910 0.14 +0.5
1,160,358 - BPHYT_RS24910 0.29 +0.5
1,160,358 - BPHYT_RS24910 0.29 -0.2
1,160,396 + BPHYT_RS24910 0.31 -0.6
1,160,462 + BPHYT_RS24910 0.35 -0.1
1,160,463 - BPHYT_RS24910 0.35 -0.5
1,160,463 - BPHYT_RS24910 0.35 -0.1
1,160,466 + BPHYT_RS24910 0.36 +0.3
1,160,466 + BPHYT_RS24910 0.36 +0.5
1,160,469 - BPHYT_RS24910 0.36 +0.8
1,160,672 + BPHYT_RS24910 0.49 +0.2
1,160,765 + BPHYT_RS24910 0.55 +0.2
1,160,766 - BPHYT_RS24910 0.55 -0.6

Or see this region's nucleotide sequence