Experiment: P. phyto corn MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS24900 and BPHYT_RS24905 are separated by 304 nucleotides BPHYT_RS24905 and BPHYT_RS24910 are separated by 126 nucleotides
BPHYT_RS24900: BPHYT_RS24900 - ABC transporter ATP-binding protein, at 1,158,484 to 1,159,215
_RS24900
BPHYT_RS24905: BPHYT_RS24905 - hypothetical protein, at 1,159,520 to 1,159,786
_RS24905
BPHYT_RS24910: BPHYT_RS24910 - NADH:ubiquinone oxidoreductase subunit M, at 1,159,913 to 1,161,469
_RS24910
Position (kb)
1159
1160 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1159.157 kb on + strand at 1159.210 kb on + strand at 1159.210 kb on + strand at 1159.210 kb on + strand at 1159.210 kb on + strand at 1159.210 kb on + strand at 1159.322 kb on + strand at 1159.323 kb on - strand at 1159.323 kb on - strand at 1159.432 kb on + strand at 1159.437 kb on - strand at 1159.697 kb on + strand, within BPHYT_RS24905 at 1159.698 kb on - strand, within BPHYT_RS24905 at 1159.698 kb on - strand, within BPHYT_RS24905 at 1159.739 kb on - strand, within BPHYT_RS24905 at 1159.739 kb on - strand, within BPHYT_RS24905 at 1159.739 kb on - strand, within BPHYT_RS24905 at 1159.739 kb on - strand, within BPHYT_RS24905 at 1159.744 kb on + strand, within BPHYT_RS24905 at 1159.745 kb on - strand, within BPHYT_RS24905 at 1159.752 kb on + strand, within BPHYT_RS24905 at 1159.753 kb on - strand, within BPHYT_RS24905 at 1159.837 kb on + strand at 1159.838 kb on - strand at 1159.838 kb on - strand at 1159.890 kb on - strand at 1159.905 kb on + strand at 1159.931 kb on - strand at 1159.931 kb on - strand at 1159.938 kb on + strand at 1159.938 kb on + strand at 1159.939 kb on - strand at 1159.939 kb on - strand at 1159.939 kb on - strand at 1159.951 kb on + strand at 1159.952 kb on - strand at 1160.132 kb on + strand, within BPHYT_RS24910 at 1160.358 kb on - strand, within BPHYT_RS24910 at 1160.358 kb on - strand, within BPHYT_RS24910 at 1160.396 kb on + strand, within BPHYT_RS24910 at 1160.462 kb on + strand, within BPHYT_RS24910 at 1160.463 kb on - strand, within BPHYT_RS24910 at 1160.463 kb on - strand, within BPHYT_RS24910 at 1160.466 kb on + strand, within BPHYT_RS24910 at 1160.466 kb on + strand, within BPHYT_RS24910 at 1160.469 kb on - strand, within BPHYT_RS24910 at 1160.672 kb on + strand, within BPHYT_RS24910 at 1160.765 kb on + strand, within BPHYT_RS24910 at 1160.766 kb on - strand, within BPHYT_RS24910
Per-strain Table
Position Strand Gene LocusTag Fraction P. phyto corn MOI 0.1 remove 1,159,157 + -1.3 1,159,210 + +0.4 1,159,210 + -0.8 1,159,210 + -0.1 1,159,210 + +0.3 1,159,210 + +0.3 1,159,322 + -0.0 1,159,323 - -0.8 1,159,323 - +0.3 1,159,432 + +0.1 1,159,437 - -0.2 1,159,697 + BPHYT_RS24905 0.66 +0.9 1,159,698 - BPHYT_RS24905 0.67 +0.2 1,159,698 - BPHYT_RS24905 0.67 +0.8 1,159,739 - BPHYT_RS24905 0.82 +0.7 1,159,739 - BPHYT_RS24905 0.82 +0.3 1,159,739 - BPHYT_RS24905 0.82 +0.1 1,159,739 - BPHYT_RS24905 0.82 +0.2 1,159,744 + BPHYT_RS24905 0.84 +1.0 1,159,745 - BPHYT_RS24905 0.84 +1.9 1,159,752 + BPHYT_RS24905 0.87 -1.8 1,159,753 - BPHYT_RS24905 0.87 -0.3 1,159,837 + -0.7 1,159,838 - +1.2 1,159,838 - -0.2 1,159,890 - +0.2 1,159,905 + +0.2 1,159,931 - -0.5 1,159,931 - +0.6 1,159,938 + -0.4 1,159,938 + +0.5 1,159,939 - -0.6 1,159,939 - +0.1 1,159,939 - +0.2 1,159,951 + -1.0 1,159,952 - +0.0 1,160,132 + BPHYT_RS24910 0.14 +0.5 1,160,358 - BPHYT_RS24910 0.29 +0.5 1,160,358 - BPHYT_RS24910 0.29 -0.2 1,160,396 + BPHYT_RS24910 0.31 -0.6 1,160,462 + BPHYT_RS24910 0.35 -0.1 1,160,463 - BPHYT_RS24910 0.35 -0.5 1,160,463 - BPHYT_RS24910 0.35 -0.1 1,160,466 + BPHYT_RS24910 0.36 +0.3 1,160,466 + BPHYT_RS24910 0.36 +0.5 1,160,469 - BPHYT_RS24910 0.36 +0.8 1,160,672 + BPHYT_RS24910 0.49 +0.2 1,160,765 + BPHYT_RS24910 0.55 +0.2 1,160,766 - BPHYT_RS24910 0.55 -0.6
Or see this region's nucleotide sequence