Experiment: P. phyto corn MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS05765 and BPHYT_RS05770 are separated by 145 nucleotides BPHYT_RS05770 and BPHYT_RS05775 are separated by 81 nucleotides BPHYT_RS05775 and BPHYT_RS05780 overlap by 4 nucleotides BPHYT_RS05780 and BPHYT_RS05785 overlap by 4 nucleotides
BPHYT_RS05765: BPHYT_RS05765 - portal protein, at 1,311,525 to 1,312,994
_RS05765
BPHYT_RS05770: BPHYT_RS05770 - peptidase U35, at 1,313,140 to 1,315,152
_RS05770
BPHYT_RS05775: BPHYT_RS05775 - hypothetical protein, at 1,315,234 to 1,315,563
_RS05775
BPHYT_RS05780: BPHYT_RS05780 - hypothetical protein, at 1,315,560 to 1,315,871
_RS05780
BPHYT_RS05785: BPHYT_RS05785 - hypothetical protein, at 1,315,868 to 1,316,299
_RS05785
Position (kb) 1313
1314
1315
1316 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1312.281 kb on + strand, within BPHYT_RS05765 at 1312.501 kb on + strand, within BPHYT_RS05765 at 1312.546 kb on - strand, within BPHYT_RS05765 at 1312.992 kb on + strand at 1312.992 kb on + strand at 1313.004 kb on + strand at 1313.005 kb on - strand at 1313.005 kb on - strand at 1313.005 kb on - strand at 1313.016 kb on + strand at 1313.263 kb on - strand at 1313.263 kb on - strand at 1313.739 kb on + strand, within BPHYT_RS05770 at 1313.889 kb on + strand, within BPHYT_RS05770 at 1314.346 kb on + strand, within BPHYT_RS05770 at 1314.473 kb on - strand, within BPHYT_RS05770 at 1314.478 kb on + strand, within BPHYT_RS05770 at 1314.599 kb on - strand, within BPHYT_RS05770 at 1314.640 kb on + strand, within BPHYT_RS05770 at 1314.641 kb on - strand, within BPHYT_RS05770 at 1314.641 kb on - strand, within BPHYT_RS05770 at 1314.641 kb on - strand, within BPHYT_RS05770 at 1314.739 kb on - strand, within BPHYT_RS05770 at 1314.875 kb on - strand, within BPHYT_RS05770 at 1314.875 kb on - strand, within BPHYT_RS05770 at 1315.009 kb on + strand at 1315.040 kb on - strand at 1315.150 kb on + strand at 1315.150 kb on + strand at 1315.151 kb on - strand at 1315.376 kb on - strand, within BPHYT_RS05775 at 1315.393 kb on + strand, within BPHYT_RS05775 at 1315.722 kb on + strand, within BPHYT_RS05780 at 1315.722 kb on + strand, within BPHYT_RS05780 at 1315.735 kb on - strand, within BPHYT_RS05780
Per-strain Table
Position Strand Gene LocusTag Fraction P. phyto corn MOI 0.1 remove 1,312,281 + BPHYT_RS05765 0.51 +0.0 1,312,501 + BPHYT_RS05765 0.66 -0.4 1,312,546 - BPHYT_RS05765 0.69 +0.8 1,312,992 + -0.9 1,312,992 + -1.4 1,313,004 + +0.4 1,313,005 - +1.3 1,313,005 - -1.0 1,313,005 - -2.6 1,313,016 + +0.0 1,313,263 - -2.3 1,313,263 - -0.9 1,313,739 + BPHYT_RS05770 0.30 -1.2 1,313,889 + BPHYT_RS05770 0.37 -0.3 1,314,346 + BPHYT_RS05770 0.60 -0.7 1,314,473 - BPHYT_RS05770 0.66 -0.2 1,314,478 + BPHYT_RS05770 0.66 -1.3 1,314,599 - BPHYT_RS05770 0.72 +0.8 1,314,640 + BPHYT_RS05770 0.75 -0.0 1,314,641 - BPHYT_RS05770 0.75 -0.3 1,314,641 - BPHYT_RS05770 0.75 -0.9 1,314,641 - BPHYT_RS05770 0.75 +0.1 1,314,739 - BPHYT_RS05770 0.79 -0.9 1,314,875 - BPHYT_RS05770 0.86 -0.5 1,314,875 - BPHYT_RS05770 0.86 +0.1 1,315,009 + +3.1 1,315,040 - -2.1 1,315,150 + +0.3 1,315,150 + +2.1 1,315,151 - -0.4 1,315,376 - BPHYT_RS05775 0.43 -0.0 1,315,393 + BPHYT_RS05775 0.48 -0.9 1,315,722 + BPHYT_RS05780 0.52 -0.2 1,315,722 + BPHYT_RS05780 0.52 -0.1 1,315,735 - BPHYT_RS05780 0.56 -0.4
Or see this region's nucleotide sequence