Experiment: P. phyto corn MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02185 and BPHYT_RS02190 are separated by 260 nucleotides BPHYT_RS02190 and BPHYT_RS02195 are separated by 181 nucleotides BPHYT_RS02195 and BPHYT_RS02200 are separated by 32 nucleotides
BPHYT_RS02185: BPHYT_RS02185 - hypothetical protein, at 502,653 to 503,165
_RS02185
BPHYT_RS02190: BPHYT_RS02190 - hypothetical protein, at 503,426 to 503,971
_RS02190
BPHYT_RS02195: BPHYT_RS02195 - hypothetical protein, at 504,153 to 504,689
_RS02195
BPHYT_RS02200: BPHYT_RS02200 - hypothetical protein, at 504,722 to 506,923
_RS02200
Position (kb) 504
505 Strain fitness (log2 ratio) -2
-1
0
1 at 503.178 kb on + strand at 503.187 kb on + strand at 503.188 kb on - strand at 503.278 kb on - strand at 503.437 kb on - strand at 503.504 kb on + strand, within BPHYT_RS02190 at 503.505 kb on - strand, within BPHYT_RS02190 at 503.545 kb on + strand, within BPHYT_RS02190 at 503.545 kb on + strand, within BPHYT_RS02190 at 503.545 kb on + strand, within BPHYT_RS02190 at 503.546 kb on - strand, within BPHYT_RS02190 at 503.761 kb on - strand, within BPHYT_RS02190 at 503.774 kb on + strand, within BPHYT_RS02190 at 503.805 kb on - strand, within BPHYT_RS02190 at 503.993 kb on + strand at 504.222 kb on + strand, within BPHYT_RS02195 at 504.286 kb on - strand, within BPHYT_RS02195 at 504.502 kb on - strand, within BPHYT_RS02195 at 504.877 kb on + strand at 505.017 kb on + strand, within BPHYT_RS02200 at 505.040 kb on + strand, within BPHYT_RS02200 at 505.155 kb on + strand, within BPHYT_RS02200 at 505.263 kb on + strand, within BPHYT_RS02200 at 505.412 kb on + strand, within BPHYT_RS02200 at 505.412 kb on + strand, within BPHYT_RS02200 at 505.412 kb on + strand, within BPHYT_RS02200 at 505.420 kb on - strand, within BPHYT_RS02200 at 505.424 kb on + strand, within BPHYT_RS02200 at 505.425 kb on - strand, within BPHYT_RS02200
Per-strain Table
Position Strand Gene LocusTag Fraction P. phyto corn MOI 0.1 remove 503,178 + +0.3 503,187 + -0.7 503,188 - +0.6 503,278 - -1.1 503,437 - +0.7 503,504 + BPHYT_RS02190 0.14 -1.2 503,505 - BPHYT_RS02190 0.14 -2.1 503,545 + BPHYT_RS02190 0.22 -0.0 503,545 + BPHYT_RS02190 0.22 +0.4 503,545 + BPHYT_RS02190 0.22 +0.3 503,546 - BPHYT_RS02190 0.22 +0.5 503,761 - BPHYT_RS02190 0.61 -0.6 503,774 + BPHYT_RS02190 0.64 -0.1 503,805 - BPHYT_RS02190 0.69 +0.1 503,993 + +0.7 504,222 + BPHYT_RS02195 0.13 +0.7 504,286 - BPHYT_RS02195 0.25 -0.3 504,502 - BPHYT_RS02195 0.65 -0.4 504,877 + +1.2 505,017 + BPHYT_RS02200 0.13 +0.5 505,040 + BPHYT_RS02200 0.14 -0.4 505,155 + BPHYT_RS02200 0.20 -0.6 505,263 + BPHYT_RS02200 0.25 -0.0 505,412 + BPHYT_RS02200 0.31 -0.1 505,412 + BPHYT_RS02200 0.31 +0.5 505,412 + BPHYT_RS02200 0.31 -0.7 505,420 - BPHYT_RS02200 0.32 +0.7 505,424 + BPHYT_RS02200 0.32 -0.5 505,425 - BPHYT_RS02200 0.32 -1.4
Or see this region's nucleotide sequence