Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS35415

Experiment: P. phyto corn MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. phyto corn MOI 1
3,544,502	+		BPHYT_RS35410	0.41	-0.6
3,544,794	+		BPHYT_RS35410	0.69	+1.9
3,544,847	+		BPHYT_RS35410	0.74	+0.3
3,544,847	+		BPHYT_RS35410	0.74	+1.1
3,544,893	+		BPHYT_RS35410	0.78	+0.7
3,544,998	+		BPHYT_RS35410	0.88	-0.6
3,545,003	+		BPHYT_RS35410	0.89	-0.4
3,545,125	-				-0.0
3,545,127	-				-0.5
3,545,315	-				+0.4
3,545,315	-				+3.3
3,545,513	+				-1.0
3,545,777	+		BPHYT_RS35415	0.23	-0.2
3,545,778	-		BPHYT_RS35415	0.23	+0.3
3,545,899	-		BPHYT_RS35415	0.31	+0.6
3,546,070	+		BPHYT_RS35415	0.43	-0.1
3,546,133	+		BPHYT_RS35415	0.47	+2.1
3,546,157	+		BPHYT_RS35415	0.49	-0.2
3,546,157	+		BPHYT_RS35415	0.49	+0.8
3,546,247	+		BPHYT_RS35415	0.55	+0.8
3,546,341	-				+0.2
3,546,635	-		BPHYT_RS35415	0.82	+0.3
3,546,763	+				-0.6
3,546,850	+				+1.2
3,546,928	-				-0.4
3,546,952	+				+0.6
3,546,952	+				+0.3
3,546,953	-				-0.1
3,547,115	+				-1.1
3,547,116	-				+0.2
3,547,281	+				+0.4
3,547,407	+				-1.0
3,547,450	+				-2.4
3,547,519	-				-0.4
3,547,614	+				+0.1
3,547,615	-				+1.6
3,547,669	+		BPHYT_RS35420	0.13	+2.0
3,547,801	+		BPHYT_RS35420	0.25	+0.8
3,547,870	+		BPHYT_RS35420	0.31	-1.1
3,547,871	-		BPHYT_RS35420	0.31	-0.6