Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS35170

Experiment: P. phyto corn MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. phyto corn MOI 1
3,494,493	+		BPHYT_RS35165	0.65	-1.0
3,494,493	+		BPHYT_RS35165	0.65	+0.1
3,494,512	-		BPHYT_RS35165	0.68	-1.1
3,494,847	+				-0.2
3,495,005	+				+0.5
3,495,005	+				+2.4
3,495,006	-				+0.7
3,495,057	+				+0.2
3,495,074	-				-1.9
3,495,333	-				+0.2
3,495,346	+				-0.7
3,495,403	-				-0.1
3,495,524	+				-0.7
3,495,525	-				+0.2
3,496,121	+		BPHYT_RS35170	0.21	+0.8
3,496,279	+		BPHYT_RS35170	0.24	-0.4
3,496,282	+		BPHYT_RS35170	0.24	-1.1
3,496,283	-		BPHYT_RS35170	0.24	-0.6
3,496,353	+		BPHYT_RS35170	0.26	+0.5
3,496,695	+		BPHYT_RS35170	0.33	+0.3
3,496,934	+		BPHYT_RS35170	0.37	-0.3
3,496,935	-		BPHYT_RS35170	0.37	+1.6
3,497,087	+		BPHYT_RS35170	0.40	+0.4
3,497,087	+		BPHYT_RS35170	0.40	+1.2
3,497,088	-		BPHYT_RS35170	0.41	-0.6
3,497,088	-		BPHYT_RS35170	0.41	-1.1
3,497,089	+		BPHYT_RS35170	0.41	+0.3
3,497,342	+		BPHYT_RS35170	0.46	-0.0
3,497,342	+		BPHYT_RS35170	0.46	+0.6
3,497,343	-		BPHYT_RS35170	0.46	+0.9
3,497,606	+		BPHYT_RS35170	0.51	-0.4
3,497,802	-		BPHYT_RS35170	0.55	-0.0
3,497,802	-		BPHYT_RS35170	0.55	-1.8
3,497,954	+		BPHYT_RS35170	0.58	-1.1
3,498,189	-		BPHYT_RS35170	0.63	+0.2
3,498,763	+				-0.9
3,498,924	-		BPHYT_RS35170	0.78	-1.0
3,498,924	-		BPHYT_RS35170	0.78	-0.6
3,499,049	+		BPHYT_RS35170	0.80	+0.2
3,499,049	+		BPHYT_RS35170	0.80	+0.4
3,499,049	+		BPHYT_RS35170	0.80	+0.2
3,499,050	-		BPHYT_RS35170	0.80	-0.1
3,499,088	+		BPHYT_RS35170	0.81	+0.7
3,499,089	-		BPHYT_RS35170	0.81	-0.2
3,499,124	+		BPHYT_RS35170	0.82	-0.3
3,499,124	+		BPHYT_RS35170	0.82	+0.0
3,499,125	-		BPHYT_RS35170	0.82	-0.1
3,499,342	-		BPHYT_RS35170	0.86	-0.8
3,499,444	+		BPHYT_RS35170	0.88	-2.8
3,499,509	-		BPHYT_RS35170	0.90	+1.2
3,499,537	-				+0.8
3,500,259	+		BPHYT_RS35175	0.20	+0.1
3,500,260	-		BPHYT_RS35175	0.20	+0.2
3,500,359	+		BPHYT_RS35175	0.34	-0.4
3,500,377	+		BPHYT_RS35175	0.37	+0.0
3,500,377	+		BPHYT_RS35175	0.37	+1.3
3,500,631	+		BPHYT_RS35175	0.74	-1.3
3,500,632	-		BPHYT_RS35175	0.74	+0.1
3,500,763	-				-0.4
3,500,952	+		BPHYT_RS35180	0.29	-2.4
3,500,953	-		BPHYT_RS35180	0.30	+0.2
3,500,995	-		BPHYT_RS35180	0.43	-0.4