Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS34620

Experiment: P. phyto corn MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. phyto corn MOI 1
3,376,384	+				-1.3
3,376,516	+				-0.3
3,376,963	+				-0.2
3,377,025	+				+1.1
3,377,025	+				-0.3
3,377,040	+				-0.1
3,377,040	+				+0.7
3,377,040	+				+1.6
3,377,074	-				+0.3
3,377,142	+				+1.1
3,377,142	+				+0.9
3,377,193	-				-0.6
3,377,243	-				+0.2
3,377,357	-		BPHYT_RS34620	0.14	-0.8
3,377,503	+		BPHYT_RS34620	0.67	-1.2
3,377,592	-				-0.2
3,377,592	-				-0.7
3,377,611	+				-0.6
3,377,611	+				+0.4
3,377,612	-				-1.1
3,377,877	-		BPHYT_RS34625	0.67	-0.2
3,377,912	+		BPHYT_RS34625	0.77	+0.7
3,377,929	+		BPHYT_RS34625	0.82	+1.1
3,377,930	-		BPHYT_RS34625	0.82	+0.5
3,378,036	-				+0.0
3,378,151	+		BPHYT_RS34630	0.18	-0.3
3,378,151	+		BPHYT_RS34630	0.18	+0.3
3,378,220	+		BPHYT_RS34630	0.31	+0.2
3,378,221	-		BPHYT_RS34630	0.32	-0.3
3,378,225	-		BPHYT_RS34630	0.32	+0.1
3,378,225	-		BPHYT_RS34630	0.32	-1.5
3,378,225	-		BPHYT_RS34630	0.32	+0.2
3,378,225	-		BPHYT_RS34630	0.32	-0.6
3,378,226	+		BPHYT_RS34630	0.33	-0.3
3,378,308	-		BPHYT_RS34630	0.48	-0.3
3,378,311	-		BPHYT_RS34630	0.49	+0.1
3,378,439	+		BPHYT_RS34630	0.74	+0.1