Experiment: P. phyto corn MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS27710 and BPHYT_RS27715 are separated by 173 nucleotides BPHYT_RS27715 and BPHYT_RS27720 overlap by 2 nucleotides BPHYT_RS27720 and BPHYT_RS27725 are separated by 0 nucleotides BPHYT_RS27725 and BPHYT_RS27730 are separated by 46 nucleotides
BPHYT_RS27710: BPHYT_RS27710 - universal stress protein A, at 1,782,113 to 1,782,943
_RS27710
BPHYT_RS27715: BPHYT_RS27715 - UspA domain-containing protein, at 1,783,117 to 1,783,593
_RS27715
BPHYT_RS27720: BPHYT_RS27720 - hypothetical protein, at 1,783,592 to 1,783,831
_RS27720
BPHYT_RS27725: BPHYT_RS27725 - hypothetical protein, at 1,783,832 to 1,784,050
_RS27725
BPHYT_RS27730: BPHYT_RS27730 - LuxR family transcriptional regulator, at 1,784,097 to 1,784,744
_RS27730
Position (kb) 1783
1784 Strain fitness (log2 ratio) -1
0
1 at 1782.158 kb on - strand at 1782.224 kb on + strand, within BPHYT_RS27710 at 1782.224 kb on + strand, within BPHYT_RS27710 at 1782.225 kb on - strand, within BPHYT_RS27710 at 1782.225 kb on - strand, within BPHYT_RS27710 at 1782.452 kb on + strand, within BPHYT_RS27710 at 1782.476 kb on + strand, within BPHYT_RS27710 at 1782.477 kb on - strand, within BPHYT_RS27710 at 1782.477 kb on - strand, within BPHYT_RS27710 at 1782.542 kb on + strand, within BPHYT_RS27710 at 1783.014 kb on - strand at 1783.417 kb on - strand, within BPHYT_RS27715 at 1783.679 kb on - strand, within BPHYT_RS27720 at 1783.943 kb on - strand, within BPHYT_RS27725
Per-strain Table
Position Strand Gene LocusTag Fraction P. phyto corn MOI 1 remove 1,782,158 - +0.0 1,782,224 + BPHYT_RS27710 0.13 -0.9 1,782,224 + BPHYT_RS27710 0.13 -0.6 1,782,225 - BPHYT_RS27710 0.13 -1.3 1,782,225 - BPHYT_RS27710 0.13 +0.5 1,782,452 + BPHYT_RS27710 0.41 +1.0 1,782,476 + BPHYT_RS27710 0.44 +1.6 1,782,477 - BPHYT_RS27710 0.44 +0.9 1,782,477 - BPHYT_RS27710 0.44 +0.3 1,782,542 + BPHYT_RS27710 0.52 -1.4 1,783,014 - -0.2 1,783,417 - BPHYT_RS27715 0.63 -1.2 1,783,679 - BPHYT_RS27720 0.36 -1.7 1,783,943 - BPHYT_RS27725 0.51 -0.7
Or see this region's nucleotide sequence