Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS24145

Experiment: P. phyto corn MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS24140 and BPHYT_RS24145 are separated by 101 nucleotidesBPHYT_RS24145 and BPHYT_RS24150 are separated by 201 nucleotides BPHYT_RS24140: BPHYT_RS24140 - 2,5-dioxovalerate dehydrogenase, at 982,995 to 984,578 _RS24140 BPHYT_RS24145: BPHYT_RS24145 - GntR family transcriptional regulator, at 984,680 to 985,423 _RS24145 BPHYT_RS24150: BPHYT_RS24150 - glucarate transporter, at 985,625 to 986,977 _RS24150 Position (kb) 984 985 986Strain fitness (log2 ratio) -3 -2 -1 0 1at 983.784 kb on + strand, within BPHYT_RS24140at 983.903 kb on + strand, within BPHYT_RS24140at 984.027 kb on + strand, within BPHYT_RS24140at 984.272 kb on - strand, within BPHYT_RS24140at 984.600 kb on + strandat 984.607 kb on + strandat 985.497 kb on - strandat 985.499 kb on - strandat 985.499 kb on - strandat 985.798 kb on + strand, within BPHYT_RS24150at 985.798 kb on + strand, within BPHYT_RS24150at 985.843 kb on + strand, within BPHYT_RS24150at 985.843 kb on + strand, within BPHYT_RS24150at 985.843 kb on + strand, within BPHYT_RS24150at 985.844 kb on - strand, within BPHYT_RS24150at 985.935 kb on + strand, within BPHYT_RS24150at 985.936 kb on - strand, within BPHYT_RS24150at 986.137 kb on - strand, within BPHYT_RS24150at 986.163 kb on + strand, within BPHYT_RS24150at 986.163 kb on + strand, within BPHYT_RS24150at 986.185 kb on - strand, within BPHYT_RS24150

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Per-strain Table

Position Strand Gene LocusTag Fraction P. phyto corn MOI 1
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983,784 + BPHYT_RS24140 0.50 -0.1
983,903 + BPHYT_RS24140 0.57 +0.9
984,027 + BPHYT_RS24140 0.65 +1.0
984,272 - BPHYT_RS24140 0.81 +0.1
984,600 + +0.6
984,607 + -0.7
985,497 - -0.7
985,499 - +0.2
985,499 - -0.1
985,798 + BPHYT_RS24150 0.13 -1.8
985,798 + BPHYT_RS24150 0.13 +0.3
985,843 + BPHYT_RS24150 0.16 -0.2
985,843 + BPHYT_RS24150 0.16 -0.6
985,843 + BPHYT_RS24150 0.16 -1.9
985,844 - BPHYT_RS24150 0.16 -2.8
985,935 + BPHYT_RS24150 0.23 +1.4
985,936 - BPHYT_RS24150 0.23 -0.1
986,137 - BPHYT_RS24150 0.38 -1.7
986,163 + BPHYT_RS24150 0.40 +0.1
986,163 + BPHYT_RS24150 0.40 -0.1
986,185 - BPHYT_RS24150 0.41 +0.4

Or see this region's nucleotide sequence