Experiment: P. phyto corn MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS23695 and BPHYT_RS23700 are separated by 70 nucleotides BPHYT_RS23700 and BPHYT_RS23705 are separated by 261 nucleotides
BPHYT_RS23695: BPHYT_RS23695 - peptidase S53, at 883,376 to 884,935
_RS23695
BPHYT_RS23700: BPHYT_RS23700 - peptidase S1, at 885,006 to 886,667
_RS23700
BPHYT_RS23705: BPHYT_RS23705 - hypothetical protein, at 886,929 to 887,582
_RS23705
Position (kb) 885
886
887 Strain fitness (log2 ratio) -2
-1
0
1 at 884.441 kb on + strand, within BPHYT_RS23695 at 884.442 kb on - strand, within BPHYT_RS23695 at 884.442 kb on - strand, within BPHYT_RS23695 at 884.807 kb on + strand at 884.808 kb on - strand at 884.810 kb on - strand at 884.931 kb on + strand at 884.931 kb on + strand at 884.933 kb on + strand at 884.933 kb on + strand at 884.933 kb on + strand at 884.933 kb on + strand at 884.934 kb on - strand at 884.934 kb on - strand at 885.033 kb on - strand at 885.138 kb on + strand at 885.300 kb on + strand, within BPHYT_RS23700 at 885.300 kb on + strand, within BPHYT_RS23700 at 885.357 kb on + strand, within BPHYT_RS23700 at 885.658 kb on - strand, within BPHYT_RS23700 at 885.825 kb on + strand, within BPHYT_RS23700 at 886.026 kb on + strand, within BPHYT_RS23700 at 886.095 kb on + strand, within BPHYT_RS23700 at 886.118 kb on - strand, within BPHYT_RS23700 at 886.236 kb on + strand, within BPHYT_RS23700 at 886.236 kb on + strand, within BPHYT_RS23700 at 886.237 kb on - strand, within BPHYT_RS23700 at 886.357 kb on - strand, within BPHYT_RS23700 at 886.450 kb on - strand, within BPHYT_RS23700 at 886.538 kb on + strand at 886.546 kb on - strand at 886.546 kb on - strand at 886.596 kb on + strand at 886.666 kb on - strand at 886.824 kb on - strand at 886.824 kb on - strand at 886.824 kb on - strand at 886.824 kb on - strand at 886.841 kb on - strand at 886.854 kb on + strand at 886.854 kb on + strand at 886.855 kb on - strand at 886.858 kb on + strand at 886.858 kb on + strand at 886.858 kb on + strand at 886.859 kb on - strand at 886.859 kb on - strand at 886.878 kb on + strand at 886.882 kb on + strand at 886.899 kb on + strand at 886.899 kb on + strand at 886.900 kb on - strand at 886.900 kb on - strand at 886.988 kb on + strand at 886.988 kb on + strand at 886.988 kb on + strand at 886.988 kb on + strand at 886.989 kb on - strand at 886.989 kb on - strand at 886.989 kb on - strand at 886.993 kb on - strand at 887.096 kb on - strand, within BPHYT_RS23705 at 887.096 kb on - strand, within BPHYT_RS23705 at 887.096 kb on - strand, within BPHYT_RS23705 at 887.628 kb on - strand at 887.628 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. phyto corn MOI 1 remove 884,441 + BPHYT_RS23695 0.68 -0.2 884,442 - BPHYT_RS23695 0.68 -0.8 884,442 - BPHYT_RS23695 0.68 -0.1 884,807 + -0.8 884,808 - -0.3 884,810 - +0.1 884,931 + +0.2 884,931 + +0.2 884,933 + -0.1 884,933 + +0.1 884,933 + +0.2 884,933 + +0.1 884,934 - +0.9 884,934 - -0.0 885,033 - +0.2 885,138 + +0.4 885,300 + BPHYT_RS23700 0.18 +0.8 885,300 + BPHYT_RS23700 0.18 -1.1 885,357 + BPHYT_RS23700 0.21 +0.2 885,658 - BPHYT_RS23700 0.39 -1.8 885,825 + BPHYT_RS23700 0.49 +0.3 886,026 + BPHYT_RS23700 0.61 +0.8 886,095 + BPHYT_RS23700 0.66 +0.5 886,118 - BPHYT_RS23700 0.67 -0.7 886,236 + BPHYT_RS23700 0.74 +1.2 886,236 + BPHYT_RS23700 0.74 -0.5 886,237 - BPHYT_RS23700 0.74 +0.4 886,357 - BPHYT_RS23700 0.81 -1.4 886,450 - BPHYT_RS23700 0.87 +0.6 886,538 + -0.9 886,546 - +0.1 886,546 - -0.3 886,596 + -0.2 886,666 - +0.1 886,824 - +1.2 886,824 - -0.1 886,824 - -0.1 886,824 - +0.3 886,841 - +0.5 886,854 + +0.5 886,854 + -0.3 886,855 - -0.4 886,858 + +0.4 886,858 + -0.5 886,858 + -0.5 886,859 - -0.6 886,859 - +1.6 886,878 + -0.5 886,882 + -0.2 886,899 + -1.4 886,899 + +0.4 886,900 - +0.4 886,900 - -0.3 886,988 + -0.1 886,988 + -0.1 886,988 + +0.7 886,988 + +0.1 886,989 - +0.8 886,989 - -0.3 886,989 - +0.6 886,993 - +0.2 887,096 - BPHYT_RS23705 0.26 +0.0 887,096 - BPHYT_RS23705 0.26 +0.0 887,096 - BPHYT_RS23705 0.26 -0.3 887,628 - -2.2 887,628 - +0.1
Or see this region's nucleotide sequence