Experiment: P. phyto corn MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22465 and BPHYT_RS22470 overlap by 4 nucleotides BPHYT_RS22470 and BPHYT_RS22475 are separated by 169 nucleotides BPHYT_RS22475 and BPHYT_RS22480 are separated by 197 nucleotides
BPHYT_RS22465: BPHYT_RS22465 - zinc carboxypeptidase-like protein, at 595,452 to 596,486
_RS22465
BPHYT_RS22470: BPHYT_RS22470 - hydrolase, at 596,483 to 597,283
_RS22470
BPHYT_RS22475: BPHYT_RS22475 - NAD-glutamate dehydrogenase, at 597,453 to 602,294
_RS22475
BPHYT_RS22480: BPHYT_RS22480 - cytochrome C551, at 602,492 to 603,397
_RS22480
Position (kb) 597
598
599
600
601
602
603 Strain fitness (log2 ratio) -2
-1
0
1
2 at 596.467 kb on - strand at 596.468 kb on + strand at 596.482 kb on + strand at 596.816 kb on - strand, within BPHYT_RS22470 at 597.325 kb on + strand at 597.371 kb on + strand at 597.371 kb on + strand at 597.372 kb on - strand at 597.622 kb on - strand at 597.691 kb on - strand at 597.691 kb on - strand at 597.826 kb on + strand at 598.624 kb on - strand, within BPHYT_RS22475 at 598.624 kb on - strand, within BPHYT_RS22475 at 599.044 kb on - strand, within BPHYT_RS22475 at 599.631 kb on - strand at 599.680 kb on + strand, within BPHYT_RS22475 at 599.727 kb on + strand, within BPHYT_RS22475 at 599.727 kb on + strand, within BPHYT_RS22475 at 599.764 kb on - strand, within BPHYT_RS22475 at 600.172 kb on - strand, within BPHYT_RS22475 at 600.452 kb on + strand, within BPHYT_RS22475 at 600.736 kb on - strand, within BPHYT_RS22475 at 601.093 kb on - strand, within BPHYT_RS22475 at 601.096 kb on - strand, within BPHYT_RS22475 at 601.096 kb on - strand, within BPHYT_RS22475 at 601.311 kb on + strand, within BPHYT_RS22475 at 602.196 kb on + strand at 602.292 kb on + strand at 602.777 kb on + strand, within BPHYT_RS22480 at 602.778 kb on - strand, within BPHYT_RS22480 at 602.819 kb on + strand, within BPHYT_RS22480 at 603.229 kb on + strand, within BPHYT_RS22480
Per-strain Table
Position Strand Gene LocusTag Fraction P. phyto corn MOI 1 remove 596,467 - -0.1 596,468 + -0.8 596,482 + -1.6 596,816 - BPHYT_RS22470 0.42 -1.9 597,325 + -1.3 597,371 + -1.3 597,371 + -0.9 597,372 - +0.5 597,622 - -2.2 597,691 - +0.6 597,691 - -0.1 597,826 + +0.1 598,624 - BPHYT_RS22475 0.24 -0.1 598,624 - BPHYT_RS22475 0.24 +2.1 599,044 - BPHYT_RS22475 0.33 +1.5 599,631 - +2.6 599,680 + BPHYT_RS22475 0.46 -2.4 599,727 + BPHYT_RS22475 0.47 -1.1 599,727 + BPHYT_RS22475 0.47 +0.2 599,764 - BPHYT_RS22475 0.48 -0.2 600,172 - BPHYT_RS22475 0.56 -1.5 600,452 + BPHYT_RS22475 0.62 +0.4 600,736 - BPHYT_RS22475 0.68 -0.3 601,093 - BPHYT_RS22475 0.75 -0.1 601,096 - BPHYT_RS22475 0.75 +2.6 601,096 - BPHYT_RS22475 0.75 -0.7 601,311 + BPHYT_RS22475 0.80 -0.8 602,196 + +0.6 602,292 + -0.4 602,777 + BPHYT_RS22480 0.31 +0.3 602,778 - BPHYT_RS22480 0.32 -0.3 602,819 + BPHYT_RS22480 0.36 -0.4 603,229 + BPHYT_RS22480 0.81 +1.4
Or see this region's nucleotide sequence