Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS19375

Experiment: P. phyto corn MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. phyto corn MOI 1
4,358,316	+				-0.7
4,358,316	+				+0.4
4,358,316	+				-1.3
4,358,317	-				+0.2
4,358,358	+				-0.7
4,358,359	-				+0.0
4,358,388	+				+0.7
4,358,393	+				-0.0
4,358,393	+				-0.2
4,358,394	-				-1.2
4,358,394	-				-1.8
4,358,487	+				-0.6
4,358,487	+				-0.1
4,358,487	+				-1.1
4,358,487	+				-0.4
4,358,493	+				+0.2
4,358,493	+				+0.4
4,358,493	+				-0.2
4,358,493	+				-0.2
4,358,507	-				+0.1
4,358,524	+				-0.9
4,358,524	+				+2.4
4,358,525	-				+0.4
4,358,525	-				-0.9
4,358,525	-				+0.1
4,358,525	-				-0.6
4,358,575	+				+0.7
4,358,651	-				-1.8
4,358,710	+				-1.5
4,358,711	-				-1.6
4,358,728	+				-1.6
4,358,729	-				+0.1
4,358,818	+				-1.3
4,358,818	+				+1.3
4,358,834	-				-0.6
4,359,150	+				-0.3
4,359,150	+				-1.9
4,359,159	+				+0.1
4,359,212	+				-0.2
4,359,212	+				+0.7
4,359,392	+				-0.2
4,359,393	-				+2.5
4,359,393	-				+1.1
4,359,407	+				-0.6
4,359,407	+				-0.1
4,359,408	-				-1.3
4,359,408	-				-0.5
4,359,408	-				-0.8
4,359,408	-				-0.4
4,359,408	-				-0.5
4,359,475	+		BPHYT_RS19375	0.11	-2.5
4,359,475	+		BPHYT_RS19375	0.11	-0.5
4,359,503	+		BPHYT_RS19375	0.13	-0.1
4,359,503	+		BPHYT_RS19375	0.13	-1.3
4,359,584	+		BPHYT_RS19375	0.18	-0.4
4,359,584	+		BPHYT_RS19375	0.18	-0.6
4,359,584	+		BPHYT_RS19375	0.18	+0.4
4,359,631	+		BPHYT_RS19375	0.20	-0.3
4,359,631	-		BPHYT_RS19375	0.20	+0.4
4,359,632	-		BPHYT_RS19375	0.20	-0.5
4,359,632	-		BPHYT_RS19375	0.20	+0.1
4,359,642	-		BPHYT_RS19375	0.21	-0.9
4,359,697	-		BPHYT_RS19375	0.24	+0.0
4,359,729	-		BPHYT_RS19375	0.26	+0.6
4,359,760	+		BPHYT_RS19375	0.28	-0.0
4,359,760	+		BPHYT_RS19375	0.28	+0.1
4,359,760	+		BPHYT_RS19375	0.28	+0.3
4,359,760	+		BPHYT_RS19375	0.28	-2.6
4,359,761	-		BPHYT_RS19375	0.28	+0.3
4,359,761	-		BPHYT_RS19375	0.28	-2.1
4,359,761	-		BPHYT_RS19375	0.28	-0.7
4,359,917	+		BPHYT_RS19375	0.37	-1.6
4,359,917	+		BPHYT_RS19375	0.37	+0.1
4,359,917	+		BPHYT_RS19375	0.37	-0.1
4,360,025	+		BPHYT_RS19375	0.43	-2.4
4,360,026	-		BPHYT_RS19375	0.43	-1.0
4,360,026	-		BPHYT_RS19375	0.43	+0.2
4,360,026	-		BPHYT_RS19375	0.43	-0.2
4,360,059	+		BPHYT_RS19375	0.45	+0.1
4,360,211	+		BPHYT_RS19375	0.54	-1.7
4,360,212	-		BPHYT_RS19375	0.54	-2.5
4,360,231	+		BPHYT_RS19375	0.55	-0.5
4,360,231	+		BPHYT_RS19375	0.55	-0.5
4,360,232	-		BPHYT_RS19375	0.55	-0.1
4,360,232	-		BPHYT_RS19375	0.55	-1.0
4,360,232	-		BPHYT_RS19375	0.55	-0.9
4,360,232	-		BPHYT_RS19375	0.55	-0.2
4,360,271	+		BPHYT_RS19375	0.57	+0.4
4,360,272	-		BPHYT_RS19375	0.57	+0.6
4,360,351	-		BPHYT_RS19375	0.62	-0.2
4,360,476	+		BPHYT_RS19375	0.69	-1.8
4,360,476	+		BPHYT_RS19375	0.69	+0.3
4,360,476	+		BPHYT_RS19375	0.69	-1.8
4,360,477	-		BPHYT_RS19375	0.69	-0.4
4,360,477	-		BPHYT_RS19375	0.69	-0.2
4,360,487	+		BPHYT_RS19375	0.70	-0.3
4,360,487	+		BPHYT_RS19375	0.70	-0.9
4,360,487	+		BPHYT_RS19375	0.70	-1.4
4,360,487	+		BPHYT_RS19375	0.70	-0.1
4,360,487	+		BPHYT_RS19375	0.70	+0.1
4,360,488	-		BPHYT_RS19375	0.70	+0.4
4,360,574	+		BPHYT_RS19375	0.75	+1.8
4,360,574	+		BPHYT_RS19375	0.75	-0.4
4,360,574	+		BPHYT_RS19375	0.75	-1.7
4,360,575	-		BPHYT_RS19375	0.75	+0.5
4,360,575	-		BPHYT_RS19375	0.75	-0.4
4,360,575	-		BPHYT_RS19375	0.75	-0.2
4,360,575	-		BPHYT_RS19375	0.75	-0.9
4,360,575	-		BPHYT_RS19375	0.75	-0.5
4,360,575	-		BPHYT_RS19375	0.75	-0.6
4,360,630	-		BPHYT_RS19375	0.78	-0.2
4,360,630	-		BPHYT_RS19375	0.78	+0.3
4,360,630	-		BPHYT_RS19375	0.78	-1.1
4,360,672	-		BPHYT_RS19375	0.80	-0.6
4,360,801	-		BPHYT_RS19375	0.88	+0.2
4,360,952	+				+0.4
4,360,952	+				+0.1
4,360,952	+				+1.3
4,360,952	+				+0.2
4,360,952	+				+0.1
4,360,953	-				+0.3
4,360,953	-				+0.1