Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS18650

Experiment: P. phyto corn MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. phyto corn MOI 1
4,192,829	+		BPHYT_RS18645	0.19	+1.5
4,192,830	-		BPHYT_RS18645	0.19	+0.2
4,193,255	-		BPHYT_RS18645	0.63	-0.2
4,193,255	-		BPHYT_RS18645	0.63	-1.3
4,193,294	-		BPHYT_RS18645	0.67	+0.2
4,193,444	-		BPHYT_RS18645	0.83	-0.3
4,193,574	+				-0.5
4,193,604	-				+0.2
4,193,605	+				+0.1
4,193,663	-				+0.2
4,193,709	-				-0.5
4,193,709	-				+0.4
4,193,746	+				-0.3
4,193,747	-				-1.1
4,193,747	-				-1.9
4,193,875	+				-0.9
4,193,875	+				+1.4
4,193,876	-				-2.2
4,193,979	+				+2.2
4,194,152	-		BPHYT_RS18650	0.18	-0.8
4,194,253	+		BPHYT_RS18650	0.24	-0.4
4,194,689	-		BPHYT_RS18650	0.48	+0.1
4,194,689	-		BPHYT_RS18650	0.48	-0.0
4,194,739	+		BPHYT_RS18650	0.51	-0.5
4,194,787	+		BPHYT_RS18650	0.53	-1.1
4,194,836	+		BPHYT_RS18650	0.56	-1.1
4,194,911	+		BPHYT_RS18650	0.60	-0.6
4,195,105	+		BPHYT_RS18650	0.71	-0.6
4,195,106	-		BPHYT_RS18650	0.71	-1.0
4,195,106	-		BPHYT_RS18650	0.71	-0.8
4,195,286	-		BPHYT_RS18650	0.81	+0.0
4,195,535	-				-0.5
4,195,568	+				+0.2
4,195,568	+				-1.2
4,195,569	-				+0.6
4,195,569	-				-0.1
4,195,627	+				-2.3
4,195,627	+				-0.5
4,195,628	-				-0.9
4,195,628	-				+0.5
4,195,731	-		BPHYT_RS18655	0.12	+0.4
4,195,731	-		BPHYT_RS18655	0.12	+2.0
4,195,731	-		BPHYT_RS18655	0.12	+1.6
4,195,733	-		BPHYT_RS18655	0.12	+1.8
4,196,181	+		BPHYT_RS18660	0.66	+0.9
4,196,182	-		BPHYT_RS18660	0.66	-0.1
4,196,204	+		BPHYT_RS18660	0.74	+0.6
4,196,310	+				+0.4
4,196,329	-				-1.3
4,196,360	+				+0.5
4,196,360	+				-1.4
4,196,360	+				-0.9
4,196,360	+				-0.0
4,196,360	+				-0.1
4,196,361	-				-0.4
4,196,361	-				+1.1
4,196,366	+				-1.8
4,196,367	-				+0.2
4,196,367	-				+0.3
4,196,444	-				-0.6
4,196,444	-				-0.5
4,196,447	+				-1.1
4,196,448	-				+0.1
4,196,448	-				+0.9
4,196,448	-				+0.3
4,196,628	+		BPHYT_RS18665	0.13	-0.1
4,196,628	+		BPHYT_RS18665	0.13	-0.1
4,196,629	-		BPHYT_RS18665	0.13	-2.4
4,196,629	-		BPHYT_RS18665	0.13	+1.4