Experiment: P. phyto corn MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS17900 and BPHYT_RS17905 overlap by 4 nucleotides BPHYT_RS17905 and BPHYT_RS17910 overlap by 4 nucleotides BPHYT_RS17910 and BPHYT_RS17915 are separated by 254 nucleotides
BPHYT_RS17900: BPHYT_RS17900 - hypothetical protein, at 4,042,182 to 4,043,114
_RS17900
BPHYT_RS17905: BPHYT_RS17905 - fimbrial assembly family protein, at 4,043,111 to 4,043,830
_RS17905
BPHYT_RS17910: BPHYT_RS17910 - hypothetical protein, at 4,043,827 to 4,044,819
_RS17910
BPHYT_RS17915: BPHYT_RS17915 - penicillin-binding protein 1A, at 4,045,074 to 4,047,473
_RS17915
Position (kb) 4043
4044
4045 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4043.108 kb on + strand at 4043.414 kb on + strand, within BPHYT_RS17905 at 4043.459 kb on + strand, within BPHYT_RS17905 at 4043.459 kb on + strand, within BPHYT_RS17905 at 4043.466 kb on - strand, within BPHYT_RS17905 at 4043.959 kb on + strand, within BPHYT_RS17910 at 4043.960 kb on - strand, within BPHYT_RS17910 at 4044.144 kb on - strand, within BPHYT_RS17910 at 4044.144 kb on - strand, within BPHYT_RS17910 at 4044.176 kb on + strand, within BPHYT_RS17910 at 4044.176 kb on + strand, within BPHYT_RS17910 at 4044.176 kb on + strand, within BPHYT_RS17910 at 4044.176 kb on + strand, within BPHYT_RS17910 at 4044.176 kb on + strand, within BPHYT_RS17910 at 4044.176 kb on + strand, within BPHYT_RS17910 at 4044.177 kb on - strand, within BPHYT_RS17910 at 4044.177 kb on - strand, within BPHYT_RS17910 at 4044.350 kb on + strand, within BPHYT_RS17910 at 4044.351 kb on - strand, within BPHYT_RS17910 at 4044.351 kb on - strand, within BPHYT_RS17910 at 4044.351 kb on - strand, within BPHYT_RS17910 at 4044.365 kb on + strand, within BPHYT_RS17910 at 4044.884 kb on + strand at 4044.960 kb on + strand at 4045.010 kb on + strand at 4045.011 kb on - strand at 4045.071 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. phyto corn MOI 1 remove 4,043,108 + -1.1 4,043,414 + BPHYT_RS17905 0.42 +0.6 4,043,459 + BPHYT_RS17905 0.48 -1.3 4,043,459 + BPHYT_RS17905 0.48 -0.6 4,043,466 - BPHYT_RS17905 0.49 +1.5 4,043,959 + BPHYT_RS17910 0.13 -0.2 4,043,960 - BPHYT_RS17910 0.13 +0.5 4,044,144 - BPHYT_RS17910 0.32 +0.3 4,044,144 - BPHYT_RS17910 0.32 -0.1 4,044,176 + BPHYT_RS17910 0.35 -0.6 4,044,176 + BPHYT_RS17910 0.35 +1.7 4,044,176 + BPHYT_RS17910 0.35 +0.6 4,044,176 + BPHYT_RS17910 0.35 +0.9 4,044,176 + BPHYT_RS17910 0.35 +1.3 4,044,176 + BPHYT_RS17910 0.35 -0.1 4,044,177 - BPHYT_RS17910 0.35 -0.4 4,044,177 - BPHYT_RS17910 0.35 +3.2 4,044,350 + BPHYT_RS17910 0.53 -0.8 4,044,351 - BPHYT_RS17910 0.53 -2.2 4,044,351 - BPHYT_RS17910 0.53 -2.3 4,044,351 - BPHYT_RS17910 0.53 -0.5 4,044,365 + BPHYT_RS17910 0.54 +2.3 4,044,884 + -0.3 4,044,960 + -0.8 4,045,010 + +0.2 4,045,011 - +0.2 4,045,071 + -1.5
Or see this region's nucleotide sequence