Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS14775

Experiment: P. phyto corn MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. phyto corn MOI 1
3,361,494	+		BPHYT_RS14770	0.45	-1.6
3,361,494	+		BPHYT_RS14770	0.45	-0.1
3,361,585	-		BPHYT_RS14770	0.52	-0.1
3,361,811	+		BPHYT_RS14770	0.72	+0.7
3,361,867	-		BPHYT_RS14770	0.76	-0.6
3,361,893	+		BPHYT_RS14770	0.78	-0.0
3,361,894	-		BPHYT_RS14770	0.79	+0.1
3,361,904	+		BPHYT_RS14770	0.79	+0.1
3,361,905	-		BPHYT_RS14770	0.79	-1.4
3,361,953	+		BPHYT_RS14770	0.84	+0.5
3,362,106	+				+0.7
3,362,133	+				+0.0
3,362,133	+				+3.3
3,362,361	+				-1.6
3,362,362	-				-0.6
3,362,388	+				-0.3
3,362,389	-				-0.0
3,362,454	+				-0.8
3,362,455	-				-0.0
3,362,455	-				-0.1
3,362,455	-				+0.3
3,362,455	-				-0.4
3,362,553	+		BPHYT_RS14775	0.21	-1.1
3,362,553	+		BPHYT_RS14775	0.21	-0.7
3,362,553	+		BPHYT_RS14775	0.21	-0.3
3,362,554	-		BPHYT_RS14775	0.21	-1.2
3,362,577	+		BPHYT_RS14775	0.26	-0.0
3,362,577	+		BPHYT_RS14775	0.26	+0.6
3,362,578	-		BPHYT_RS14775	0.26	-0.8
3,362,578	-		BPHYT_RS14775	0.26	-2.0
3,362,578	-		BPHYT_RS14775	0.26	-0.2
3,362,593	+		BPHYT_RS14775	0.29	-0.3
3,362,594	-		BPHYT_RS14775	0.29	+0.6
3,362,942	+				+0.4
3,363,018	+				+2.9
3,363,141	-		BPHYT_RS14780	0.17	-1.4
3,363,227	-		BPHYT_RS14780	0.25	+0.6
3,363,261	+		BPHYT_RS14780	0.28	-0.3
3,363,263	+				+1.3
3,363,264	-		BPHYT_RS14780	0.28	+1.7
3,363,264	-		BPHYT_RS14780	0.28	+0.1
3,363,264	-		BPHYT_RS14780	0.28	-0.4
3,363,642	+		BPHYT_RS14780	0.61	-0.3
3,363,642	+		BPHYT_RS14780	0.61	+0.7
3,363,675	-		BPHYT_RS14780	0.64	-2.1
3,363,675	-		BPHYT_RS14780	0.64	-0.1
3,363,770	+		BPHYT_RS14780	0.72	+0.3
3,363,771	-		BPHYT_RS14780	0.72	-1.8
3,363,797	+		BPHYT_RS14780	0.75	-1.8
3,363,873	+		BPHYT_RS14780	0.81	-0.7
3,363,874	-		BPHYT_RS14780	0.81	-0.0