Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS10395

Experiment: P. phyto corn MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS10390 and BPHYT_RS10395 are separated by 18 nucleotidesBPHYT_RS10395 and BPHYT_RS10400 are separated by 45 nucleotidesBPHYT_RS10400 and BPHYT_RS10405 are separated by 34 nucleotides BPHYT_RS10390: BPHYT_RS10390 - nitrate ABC transporter substrate-binding protein, at 2,361,524 to 2,362,591 _RS10390 BPHYT_RS10395: BPHYT_RS10395 - sulfonate ABC transporter, at 2,362,610 to 2,363,470 _RS10395 BPHYT_RS10400: BPHYT_RS10400 - taurine ABC transporter permease, at 2,363,516 to 2,364,388 _RS10400 BPHYT_RS10405: BPHYT_RS10405 - sulfonate ABC transporter ATP-binding protein, at 2,364,423 to 2,365,319 _RS10405 Position (kb) 2362 2363 2364Strain fitness (log2 ratio) -2 -1 0 1 2at 2362.122 kb on - strand, within BPHYT_RS10390at 2362.430 kb on + strand, within BPHYT_RS10390at 2362.873 kb on + strand, within BPHYT_RS10395at 2362.873 kb on + strand, within BPHYT_RS10395at 2363.489 kb on + strandat 2364.066 kb on - strand, within BPHYT_RS10400

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Per-strain Table

Position Strand Gene LocusTag Fraction P. phyto corn MOI 1
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2,362,122 - BPHYT_RS10390 0.56 -0.0
2,362,430 + BPHYT_RS10390 0.85 -0.3
2,362,873 + BPHYT_RS10395 0.31 -2.0
2,362,873 + BPHYT_RS10395 0.31 -1.8
2,363,489 + +1.8
2,364,066 - BPHYT_RS10400 0.63 -0.6

Or see this region's nucleotide sequence