Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS09355

Experiment: P. phyto corn MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. phyto corn MOI 1
2,119,387	+		BPHYT_RS09350	0.26	-0.6
2,119,388	-		BPHYT_RS09350	0.26	+0.4
2,119,388	-		BPHYT_RS09350	0.26	-2.5
2,119,540	-		BPHYT_RS09350	0.39	-2.2
2,119,824	+		BPHYT_RS09350	0.64	+0.2
2,119,896	+		BPHYT_RS09350	0.70	-1.1
2,119,897	-		BPHYT_RS09350	0.70	+0.1
2,119,915	-		BPHYT_RS09350	0.72	+1.9
2,119,915	-		BPHYT_RS09350	0.72	+0.3
2,120,772	-		BPHYT_RS09355	0.44	+2.1
2,120,772	-		BPHYT_RS09355	0.44	+0.0
2,120,801	-		BPHYT_RS09355	0.48	+0.7
2,121,291	-				+1.0
2,121,305	-				-1.7
2,121,320	+				+0.4
2,121,321	-				-0.3
2,121,322	+				+0.4
2,121,323	-				+0.9
2,121,324	-				-1.8
2,121,325	+				-0.3
2,121,647	+		BPHYT_RS09360	0.25	+1.4
2,121,647	+		BPHYT_RS09360	0.25	-1.2
2,121,648	-		BPHYT_RS09360	0.25	-0.9
2,121,716	+		BPHYT_RS09360	0.35	+0.9
2,121,717	-		BPHYT_RS09360	0.35	-0.2
2,121,767	+		BPHYT_RS09360	0.42	+0.2
2,121,903	+		BPHYT_RS09360	0.61	-1.1
2,121,904	-		BPHYT_RS09360	0.61	-0.1
2,121,929	-		BPHYT_RS09360	0.65	-1.5
2,122,104	+		BPHYT_RS09360	0.90	-0.1
2,122,142	-				-0.4