Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS06480

Experiment: P. phyto corn MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. phyto corn MOI 1
1,472,745	+				-0.5
1,472,762	-				-0.2
1,472,837	-				+0.5
1,472,845	+				+0.2
1,472,845	+				+0.2
1,472,845	+				-1.0
1,472,845	+				+0.5
1,472,847	+				-1.0
1,472,847	+				-0.4
1,472,847	+				-0.7
1,472,848	-				+0.8
1,473,044	+				-0.9
1,473,218	-		BPHYT_RS06475	0.38	+1.4
1,474,289	+		BPHYT_RS06480	0.24	-0.3
1,474,295	-		BPHYT_RS06480	0.24	+1.2
1,474,519	+		BPHYT_RS06480	0.33	-1.6
1,474,520	-		BPHYT_RS06480	0.33	+0.5
1,474,520	-		BPHYT_RS06480	0.33	-0.1
1,474,521	+		BPHYT_RS06480	0.33	-0.1
1,474,521	+		BPHYT_RS06480	0.33	+0.2
1,474,521	+		BPHYT_RS06480	0.33	-0.8
1,474,521	+		BPHYT_RS06480	0.33	-0.3
1,474,871	-		BPHYT_RS06480	0.47	-1.1
1,475,217	+		BPHYT_RS06480	0.61	+0.1
1,475,260	+		BPHYT_RS06480	0.63	+0.1
1,475,407	+		BPHYT_RS06480	0.69	+0.4
1,475,854	+		BPHYT_RS06480	0.87	+0.3
1,475,887	-		BPHYT_RS06480	0.88	-0.7
1,475,887	-		BPHYT_RS06480	0.88	+0.2
1,476,019	+				-0.3
1,476,019	+				-0.6
1,476,049	+				+0.4
1,476,050	-				-0.2
1,476,207	-				-0.6
1,476,426	+		BPHYT_RS06485	0.53	-0.0
1,476,653	-				-0.5
1,476,906	+		BPHYT_RS06490	0.47	-1.8
1,476,907	-		BPHYT_RS06490	0.47	-0.8
1,477,015	+		BPHYT_RS06490	0.64	-1.4
1,477,015	+		BPHYT_RS06490	0.64	-1.7
1,477,082	+		BPHYT_RS06490	0.74	-0.6
1,477,108	+		BPHYT_RS06490	0.79	-1.2