Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS05255

Experiment: P. phyto corn MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. phyto corn MOI 1
1,211,665	+				+0.2
1,211,666	-				-0.0
1,211,666	-				-0.1
1,211,705	+				+0.1
1,212,120	+		BPHYT_RS05250	0.19	-1.0
1,212,194	+		BPHYT_RS05250	0.31	-0.4
1,212,312	-		BPHYT_RS05250	0.49	+1.0
1,212,326	+		BPHYT_RS05250	0.51	-1.1
1,212,370	-		BPHYT_RS05250	0.57	+1.0
1,212,370	-		BPHYT_RS05250	0.57	+1.3
1,212,370	-		BPHYT_RS05250	0.57	-0.5
1,212,414	+		BPHYT_RS05250	0.64	+0.7
1,212,415	-		BPHYT_RS05250	0.64	-0.8
1,212,415	-		BPHYT_RS05250	0.64	+0.5
1,212,447	+		BPHYT_RS05250	0.69	+0.1
1,212,557	+		BPHYT_RS05250	0.86	-0.1
1,213,181	-		BPHYT_RS05255	0.39	+1.4
1,213,865	+		BPHYT_RS05255	0.89	-1.6
1,214,110	+				-0.3
1,214,114	-				-1.3
1,214,131	-				-0.2
1,214,395	+				-1.3
1,214,419	+				-0.1
1,214,437	-				+0.0
1,214,469	-				-0.2
1,214,489	+				+0.4
1,214,565	-		BPHYT_RS05260	0.16	+1.4
1,214,580	+		BPHYT_RS05260	0.19	+1.3
1,214,580	+		BPHYT_RS05260	0.19	-0.7
1,214,655	+		BPHYT_RS05260	0.32	-1.1
1,214,664	+		BPHYT_RS05260	0.34	+0.9
1,214,664	+		BPHYT_RS05260	0.34	-0.4
1,214,665	-		BPHYT_RS05260	0.34	+1.1
1,214,665	-		BPHYT_RS05260	0.34	-0.1
1,214,665	-		BPHYT_RS05260	0.34	-0.1
1,214,719	-		BPHYT_RS05260	0.44	+1.2
1,214,907	-		BPHYT_RS05260	0.77	-1.2
1,214,924	+		BPHYT_RS05260	0.80	+1.9