Experiment: P. phyto corn MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS04930 and BPHYT_RS04935 are separated by 4 nucleotides BPHYT_RS04935 and BPHYT_RS04940 are separated by 72 nucleotides BPHYT_RS04940 and BPHYT_RS04945 are separated by 22 nucleotides
BPHYT_RS04930: BPHYT_RS04930 - segregation and condensation protein A, at 1,131,909 to 1,132,784
_RS04930
BPHYT_RS04935: BPHYT_RS04935 - hypothetical protein, at 1,132,789 to 1,132,974
_RS04935
BPHYT_RS04940: BPHYT_RS04940 - hypothetical protein, at 1,133,047 to 1,133,277
_RS04940
BPHYT_RS04945: BPHYT_RS04945 - membrane protein, at 1,133,300 to 1,135,135
_RS04945
Position (kb) 1133
1134 Strain fitness (log2 ratio) -1
0
1
2
3 at 1133.049 kb on - strand at 1133.124 kb on + strand, within BPHYT_RS04940 at 1133.234 kb on - strand, within BPHYT_RS04940 at 1133.234 kb on - strand, within BPHYT_RS04940 at 1133.234 kb on - strand, within BPHYT_RS04940 at 1133.376 kb on + strand at 1133.469 kb on - strand at 1133.633 kb on + strand, within BPHYT_RS04945 at 1133.634 kb on - strand, within BPHYT_RS04945 at 1133.634 kb on - strand, within BPHYT_RS04945 at 1133.665 kb on + strand, within BPHYT_RS04945 at 1133.888 kb on + strand, within BPHYT_RS04945 at 1133.889 kb on - strand, within BPHYT_RS04945 at 1133.906 kb on + strand, within BPHYT_RS04945 at 1133.906 kb on + strand, within BPHYT_RS04945 at 1133.906 kb on + strand, within BPHYT_RS04945 at 1133.907 kb on - strand, within BPHYT_RS04945 at 1133.907 kb on - strand, within BPHYT_RS04945 at 1133.963 kb on + strand, within BPHYT_RS04945 at 1133.963 kb on + strand, within BPHYT_RS04945 at 1133.963 kb on + strand, within BPHYT_RS04945 at 1133.964 kb on - strand, within BPHYT_RS04945 at 1133.964 kb on - strand, within BPHYT_RS04945 at 1134.003 kb on + strand, within BPHYT_RS04945 at 1134.004 kb on - strand, within BPHYT_RS04945 at 1134.071 kb on + strand, within BPHYT_RS04945 at 1134.125 kb on + strand, within BPHYT_RS04945 at 1134.125 kb on + strand, within BPHYT_RS04945 at 1134.203 kb on + strand, within BPHYT_RS04945 at 1134.204 kb on - strand, within BPHYT_RS04945 at 1134.204 kb on - strand, within BPHYT_RS04945 at 1134.204 kb on - strand, within BPHYT_RS04945 at 1134.210 kb on - strand, within BPHYT_RS04945 at 1134.210 kb on - strand at 1134.210 kb on - strand, within BPHYT_RS04945 at 1134.210 kb on - strand, within BPHYT_RS04945 at 1134.236 kb on + strand at 1134.272 kb on + strand, within BPHYT_RS04945 at 1134.272 kb on + strand, within BPHYT_RS04945 at 1134.272 kb on + strand, within BPHYT_RS04945 at 1134.272 kb on + strand, within BPHYT_RS04945 at 1134.272 kb on + strand, within BPHYT_RS04945 at 1134.272 kb on + strand, within BPHYT_RS04945
Per-strain Table
Position Strand Gene LocusTag Fraction P. phyto corn MOI 1 remove 1,133,049 - -0.3 1,133,124 + BPHYT_RS04940 0.33 -0.1 1,133,234 - BPHYT_RS04940 0.81 +2.1 1,133,234 - BPHYT_RS04940 0.81 +2.3 1,133,234 - BPHYT_RS04940 0.81 +2.4 1,133,376 + -0.2 1,133,469 - +2.0 1,133,633 + BPHYT_RS04945 0.18 +2.2 1,133,634 - BPHYT_RS04945 0.18 +2.4 1,133,634 - BPHYT_RS04945 0.18 +2.2 1,133,665 + BPHYT_RS04945 0.20 +2.8 1,133,888 + BPHYT_RS04945 0.32 +2.4 1,133,889 - BPHYT_RS04945 0.32 +2.6 1,133,906 + BPHYT_RS04945 0.33 +2.4 1,133,906 + BPHYT_RS04945 0.33 +2.0 1,133,906 + BPHYT_RS04945 0.33 +2.4 1,133,907 - BPHYT_RS04945 0.33 +2.4 1,133,907 - BPHYT_RS04945 0.33 +1.6 1,133,963 + BPHYT_RS04945 0.36 +1.6 1,133,963 + BPHYT_RS04945 0.36 +2.0 1,133,963 + BPHYT_RS04945 0.36 +1.5 1,133,964 - BPHYT_RS04945 0.36 +2.0 1,133,964 - BPHYT_RS04945 0.36 +1.8 1,134,003 + BPHYT_RS04945 0.38 +1.8 1,134,004 - BPHYT_RS04945 0.38 +2.3 1,134,071 + BPHYT_RS04945 0.42 +2.5 1,134,125 + BPHYT_RS04945 0.45 +2.5 1,134,125 + BPHYT_RS04945 0.45 +2.2 1,134,203 + BPHYT_RS04945 0.49 +1.8 1,134,204 - BPHYT_RS04945 0.49 +2.2 1,134,204 - BPHYT_RS04945 0.49 +1.3 1,134,204 - BPHYT_RS04945 0.49 +2.3 1,134,210 - BPHYT_RS04945 0.50 +1.9 1,134,210 - +0.9 1,134,210 - BPHYT_RS04945 0.50 +2.1 1,134,210 - BPHYT_RS04945 0.50 +2.3 1,134,236 + +2.4 1,134,272 + BPHYT_RS04945 0.53 +2.3 1,134,272 + BPHYT_RS04945 0.53 +2.0 1,134,272 + BPHYT_RS04945 0.53 +2.8 1,134,272 + BPHYT_RS04945 0.53 +1.9 1,134,272 + BPHYT_RS04945 0.53 +2.6 1,134,272 + BPHYT_RS04945 0.53 -0.6
Or see this region's nucleotide sequence