Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS04425

Experiment: P. phyto corn MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS04420 and BPHYT_RS04425 are separated by 310 nucleotidesBPHYT_RS04425 and BPHYT_RS04430 are separated by 938 nucleotides BPHYT_RS04420: BPHYT_RS04420 - glycosyl transferase family 1, at 1,020,809 to 1,022,062 _RS04420 BPHYT_RS04425: BPHYT_RS04425 - UDP-phosphate galactose phosphotransferase, at 1,022,373 to 1,023,236 _RS04425 BPHYT_RS04430: BPHYT_RS04430 - amino acid ABC transporter ATPase, at 1,024,175 to 1,024,909 _RS04430 Position (kb) 1022 1023 1024Strain fitness (log2 ratio) -2 -1 0 1 2at 1022.281 kb on + strandat 1022.343 kb on + strandat 1022.499 kb on - strand, within BPHYT_RS04425at 1022.704 kb on - strand, within BPHYT_RS04425at 1022.714 kb on + strand, within BPHYT_RS04425at 1022.905 kb on - strand, within BPHYT_RS04425at 1023.269 kb on - strandat 1023.757 kb on - strandat 1023.815 kb on + strandat 1023.893 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction P. phyto corn MOI 1
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1,022,281 + +0.7
1,022,343 + +1.1
1,022,499 - BPHYT_RS04425 0.15 -0.5
1,022,704 - BPHYT_RS04425 0.38 -0.4
1,022,714 + BPHYT_RS04425 0.39 -0.4
1,022,905 - BPHYT_RS04425 0.62 -1.4
1,023,269 - +2.5
1,023,757 - +0.7
1,023,815 + -0.2
1,023,893 + -2.1

Or see this region's nucleotide sequence