Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS04005

Experiment: P. phyto corn MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS04000 and BPHYT_RS04005 are separated by 5 nucleotidesBPHYT_RS04005 and BPHYT_RS04010 are separated by 112 nucleotides BPHYT_RS04000: BPHYT_RS04000 - GDP-mannose 4,6-dehydratase, at 911,288 to 912,406 _RS04000 BPHYT_RS04005: BPHYT_RS04005 - GDP-L-fucose synthase, at 912,412 to 913,371 _RS04005 BPHYT_RS04010: BPHYT_RS04010 - glycosyl transferase, at 913,484 to 914,626 _RS04010 Position (kb) 912 913 914Strain fitness (log2 ratio) -1 0 1at 911.542 kb on + strand, within BPHYT_RS04000at 911.675 kb on + strand, within BPHYT_RS04000at 911.923 kb on + strand, within BPHYT_RS04000at 911.940 kb on - strand, within BPHYT_RS04000at 912.036 kb on - strand, within BPHYT_RS04000at 912.218 kb on + strand, within BPHYT_RS04000at 912.655 kb on + strand, within BPHYT_RS04005at 912.932 kb on - strand, within BPHYT_RS04005at 913.463 kb on - strandat 914.307 kb on - strand, within BPHYT_RS04010

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Per-strain Table

Position Strand Gene LocusTag Fraction P. phyto corn MOI 1
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911,542 + BPHYT_RS04000 0.23 -1.6
911,675 + BPHYT_RS04000 0.35 -0.2
911,923 + BPHYT_RS04000 0.57 +0.2
911,940 - BPHYT_RS04000 0.58 -1.3
912,036 - BPHYT_RS04000 0.67 -1.0
912,218 + BPHYT_RS04000 0.83 -0.9
912,655 + BPHYT_RS04005 0.25 +0.5
912,932 - BPHYT_RS04005 0.54 -1.0
913,463 - +0.4
914,307 - BPHYT_RS04010 0.72 +1.1

Or see this region's nucleotide sequence