Experiment: P. phyto corn MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03790 and BPHYT_RS03795 are separated by 326 nucleotides BPHYT_RS03795 and BPHYT_RS03800 are separated by 82 nucleotides
BPHYT_RS03790: BPHYT_RS03790 - diguanylate phosphodiesterase, at 854,800 to 855,633
_RS03790
BPHYT_RS03795: BPHYT_RS03795 - 4-hydroxybenzoate transporter, at 855,960 to 857,324
_RS03795
BPHYT_RS03800: BPHYT_RS03800 - homogentisate 1,2-dioxygenase, at 857,407 to 858,705
_RS03800
Position (kb) 855
856
857
858 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 855.072 kb on - strand, within BPHYT_RS03790 at 855.080 kb on + strand, within BPHYT_RS03790 at 855.095 kb on + strand, within BPHYT_RS03790 at 855.207 kb on - strand, within BPHYT_RS03790 at 855.247 kb on + strand, within BPHYT_RS03790 at 855.358 kb on + strand, within BPHYT_RS03790 at 855.358 kb on + strand, within BPHYT_RS03790 at 855.359 kb on - strand, within BPHYT_RS03790 at 855.495 kb on - strand, within BPHYT_RS03790 at 855.635 kb on + strand at 855.635 kb on + strand at 855.635 kb on + strand at 855.636 kb on - strand at 855.636 kb on - strand at 855.636 kb on - strand at 855.636 kb on - strand at 855.636 kb on - strand at 855.636 kb on - strand at 855.636 kb on - strand at 855.642 kb on - strand at 855.676 kb on + strand at 855.677 kb on - strand at 855.714 kb on + strand at 855.715 kb on - strand at 855.715 kb on - strand at 855.715 kb on - strand at 855.848 kb on + strand at 855.848 kb on + strand at 855.849 kb on - strand at 855.849 kb on - strand at 855.871 kb on + strand at 855.871 kb on + strand at 855.872 kb on - strand at 855.872 kb on - strand at 855.872 kb on - strand at 855.872 kb on - strand at 856.110 kb on + strand, within BPHYT_RS03795 at 856.110 kb on + strand, within BPHYT_RS03795 at 856.110 kb on + strand, within BPHYT_RS03795 at 856.448 kb on + strand, within BPHYT_RS03795 at 856.794 kb on + strand, within BPHYT_RS03795 at 857.097 kb on + strand, within BPHYT_RS03795 at 857.097 kb on + strand, within BPHYT_RS03795 at 857.355 kb on + strand at 857.356 kb on - strand at 857.507 kb on - strand at 857.562 kb on + strand, within BPHYT_RS03800 at 857.607 kb on + strand, within BPHYT_RS03800 at 857.607 kb on + strand, within BPHYT_RS03800 at 857.608 kb on - strand, within BPHYT_RS03800 at 857.798 kb on - strand, within BPHYT_RS03800 at 857.833 kb on + strand, within BPHYT_RS03800 at 857.833 kb on + strand, within BPHYT_RS03800 at 857.989 kb on + strand, within BPHYT_RS03800 at 858.094 kb on + strand, within BPHYT_RS03800 at 858.202 kb on + strand, within BPHYT_RS03800 at 858.217 kb on + strand, within BPHYT_RS03800 at 858.217 kb on + strand, within BPHYT_RS03800 at 858.218 kb on - strand, within BPHYT_RS03800 at 858.321 kb on + strand, within BPHYT_RS03800 at 858.322 kb on - strand, within BPHYT_RS03800
Per-strain Table
Position Strand Gene LocusTag Fraction P. phyto corn MOI 1 remove 855,072 - BPHYT_RS03790 0.33 -0.4 855,080 + BPHYT_RS03790 0.34 -1.1 855,095 + BPHYT_RS03790 0.35 -1.4 855,207 - BPHYT_RS03790 0.49 -0.8 855,247 + BPHYT_RS03790 0.54 +0.1 855,358 + BPHYT_RS03790 0.67 +0.0 855,358 + BPHYT_RS03790 0.67 -1.3 855,359 - BPHYT_RS03790 0.67 -0.8 855,495 - BPHYT_RS03790 0.83 +0.1 855,635 + -0.6 855,635 + +0.5 855,635 + -0.2 855,636 - +0.4 855,636 - -0.5 855,636 - -2.1 855,636 - -1.3 855,636 - +0.7 855,636 - -0.8 855,636 - -0.9 855,642 - -0.4 855,676 + -0.3 855,677 - -1.4 855,714 + -0.1 855,715 - -0.7 855,715 - +0.5 855,715 - -0.5 855,848 + -1.4 855,848 + -2.1 855,849 - -0.3 855,849 - +0.6 855,871 + +0.3 855,871 + -0.8 855,872 - -0.3 855,872 - -0.5 855,872 - -2.9 855,872 - -1.0 856,110 + BPHYT_RS03795 0.11 +0.1 856,110 + BPHYT_RS03795 0.11 -0.2 856,110 + BPHYT_RS03795 0.11 +0.0 856,448 + BPHYT_RS03795 0.36 +0.4 856,794 + BPHYT_RS03795 0.61 +1.0 857,097 + BPHYT_RS03795 0.83 +0.4 857,097 + BPHYT_RS03795 0.83 -0.5 857,355 + +1.3 857,356 - -0.5 857,507 - +0.2 857,562 + BPHYT_RS03800 0.12 +0.4 857,607 + BPHYT_RS03800 0.15 +0.2 857,607 + BPHYT_RS03800 0.15 -0.3 857,608 - BPHYT_RS03800 0.15 -0.0 857,798 - BPHYT_RS03800 0.30 +1.8 857,833 + BPHYT_RS03800 0.33 -1.5 857,833 + BPHYT_RS03800 0.33 +0.2 857,989 + BPHYT_RS03800 0.45 -0.5 858,094 + BPHYT_RS03800 0.53 +1.2 858,202 + BPHYT_RS03800 0.61 +1.1 858,217 + BPHYT_RS03800 0.62 +0.4 858,217 + BPHYT_RS03800 0.62 +0.1 858,218 - BPHYT_RS03800 0.62 -0.9 858,321 + BPHYT_RS03800 0.70 +0.2 858,322 - BPHYT_RS03800 0.70 -0.3
Or see this region's nucleotide sequence