Experiment: P. phyto corn MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03780 and BPHYT_RS03785 are separated by 104 nucleotides BPHYT_RS03785 and BPHYT_RS03790 are separated by 44 nucleotides
BPHYT_RS03780: BPHYT_RS03780 - acyl-CoA dehydrogenase, at 852,675 to 853,865
_RS03780
BPHYT_RS03785: BPHYT_RS03785 - IclR family transcriptional regulator, at 853,970 to 854,755
_RS03785
BPHYT_RS03790: BPHYT_RS03790 - diguanylate phosphodiesterase, at 854,800 to 855,633
_RS03790
Position (kb) 853
854
855 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 853.039 kb on + strand, within BPHYT_RS03780 at 853.099 kb on + strand, within BPHYT_RS03780 at 853.100 kb on - strand, within BPHYT_RS03780 at 853.382 kb on - strand, within BPHYT_RS03780 at 853.495 kb on + strand, within BPHYT_RS03780 at 853.495 kb on + strand, within BPHYT_RS03780 at 853.528 kb on + strand, within BPHYT_RS03780 at 853.627 kb on + strand, within BPHYT_RS03780 at 853.628 kb on - strand, within BPHYT_RS03780 at 853.768 kb on + strand at 853.870 kb on + strand at 853.871 kb on - strand at 853.871 kb on - strand at 853.871 kb on - strand at 853.871 kb on - strand at 853.961 kb on + strand at 853.961 kb on + strand at 853.962 kb on - strand at 854.142 kb on - strand, within BPHYT_RS03785 at 854.142 kb on - strand, within BPHYT_RS03785 at 854.192 kb on + strand, within BPHYT_RS03785 at 854.192 kb on + strand, within BPHYT_RS03785 at 854.193 kb on - strand, within BPHYT_RS03785 at 854.193 kb on - strand, within BPHYT_RS03785 at 854.570 kb on + strand, within BPHYT_RS03785 at 854.820 kb on - strand at 854.820 kb on - strand at 854.862 kb on - strand at 854.944 kb on + strand, within BPHYT_RS03790 at 855.072 kb on - strand, within BPHYT_RS03790 at 855.080 kb on + strand, within BPHYT_RS03790 at 855.095 kb on + strand, within BPHYT_RS03790 at 855.207 kb on - strand, within BPHYT_RS03790 at 855.247 kb on + strand, within BPHYT_RS03790 at 855.358 kb on + strand, within BPHYT_RS03790 at 855.358 kb on + strand, within BPHYT_RS03790 at 855.359 kb on - strand, within BPHYT_RS03790 at 855.495 kb on - strand, within BPHYT_RS03790 at 855.635 kb on + strand at 855.635 kb on + strand at 855.635 kb on + strand at 855.636 kb on - strand at 855.636 kb on - strand at 855.636 kb on - strand at 855.636 kb on - strand at 855.636 kb on - strand at 855.636 kb on - strand at 855.636 kb on - strand at 855.642 kb on - strand at 855.676 kb on + strand at 855.677 kb on - strand at 855.714 kb on + strand at 855.715 kb on - strand at 855.715 kb on - strand at 855.715 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. phyto corn MOI 1 remove 853,039 + BPHYT_RS03780 0.31 +0.6 853,099 + BPHYT_RS03780 0.36 +0.3 853,100 - BPHYT_RS03780 0.36 -1.7 853,382 - BPHYT_RS03780 0.59 -0.5 853,495 + BPHYT_RS03780 0.69 +1.4 853,495 + BPHYT_RS03780 0.69 +0.7 853,528 + BPHYT_RS03780 0.72 -1.5 853,627 + BPHYT_RS03780 0.80 +0.3 853,628 - BPHYT_RS03780 0.80 +1.9 853,768 + -2.4 853,870 + +0.2 853,871 - +0.9 853,871 - -0.0 853,871 - -0.3 853,871 - -0.5 853,961 + -0.7 853,961 + -0.4 853,962 - -0.4 854,142 - BPHYT_RS03785 0.22 -0.5 854,142 - BPHYT_RS03785 0.22 -0.7 854,192 + BPHYT_RS03785 0.28 -0.3 854,192 + BPHYT_RS03785 0.28 -3.2 854,193 - BPHYT_RS03785 0.28 -1.4 854,193 - BPHYT_RS03785 0.28 +1.5 854,570 + BPHYT_RS03785 0.76 -1.9 854,820 - -0.8 854,820 - +1.0 854,862 - +0.1 854,944 + BPHYT_RS03790 0.17 +1.1 855,072 - BPHYT_RS03790 0.33 -0.4 855,080 + BPHYT_RS03790 0.34 -1.1 855,095 + BPHYT_RS03790 0.35 -1.4 855,207 - BPHYT_RS03790 0.49 -0.8 855,247 + BPHYT_RS03790 0.54 +0.1 855,358 + BPHYT_RS03790 0.67 +0.0 855,358 + BPHYT_RS03790 0.67 -1.3 855,359 - BPHYT_RS03790 0.67 -0.8 855,495 - BPHYT_RS03790 0.83 +0.1 855,635 + -0.6 855,635 + +0.5 855,635 + -0.2 855,636 - +0.4 855,636 - -0.5 855,636 - -2.1 855,636 - -1.3 855,636 - +0.7 855,636 - -0.8 855,636 - -0.9 855,642 - -0.4 855,676 + -0.3 855,677 - -1.4 855,714 + -0.1 855,715 - -0.7 855,715 - +0.5 855,715 - -0.5
Or see this region's nucleotide sequence